Clostridium beijerinckii ATCC 35702: Cbs_4883
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Entry
Cbs_4883 CDS
T03415
Name
(GenBank) DEAD_2 domain-containing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cbz
Clostridium beijerinckii ATCC 35702
Pathway
cbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Cbs_4883
09124 Replication and repair
03420 Nucleotide excision repair
Cbs_4883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbz03021
]
Cbs_4883
03036 Chromosome and associated proteins [BR:
cbz03036
]
Cbs_4883
03400 DNA repair and recombination proteins [BR:
cbz03400
]
Cbs_4883
Enzymes [BR:
cbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Cbs_4883
Transcription machinery [BR:
cbz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Cbs_4883
Chromosome and associated proteins [BR:
cbz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Cbs_4883
DNA repair and recombination proteins [BR:
cbz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Cbs_4883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Helicase_C
PhoH
PDDEXK_1
IMS_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIU02128
LinkDB
All DBs
Position
complement(5715515..5717800)
Genome browser
AA seq
761 aa
AA seq
DB search
MDKILIRESVRNLVEFCLKKGDIDNRFSGSARAVEGVRAHQKLQEDNGRVYENYEKEVYL
THEFETNKSLIYIEGRADGIITEKDKVIIEEIKSTYKNFAYIDDLNEVHWAQAKVYAFIY
GNQNNLEEIYVRLSYMQLETNEVKSFEKKFTIGELEEFISDLLREYERFSVLIFKWKNIR
DETIKVLNFPFEKYREGQRKLINVSYQTIKEEEILFVQAPTGIGKTISTIFPAVKAISEG
IGEKIIYLTAKTINREVAEETFERLRQEGLKFRTITITAKEKTCINDDFDCNPEKCIYAK
DYYGKVKKVITNVIEREERISTEILKEYAEKYQVCPFELSLDISTYCDGIIGDYNYIFDP
RVSLSRVLESKGNIVLVDEAHNLIDRSRNMYSASLYKSQILNCKKITKGKLNKLHSLLGK
INDYFINLRNECDHREVKSFYEEEHPKELSKYLQLYLKESEEVLVRGNRFDGYEDILKLY
FDMNAFTSTTQLYDENYRTCIEKDSQEIKLTLYCVNPAKNLREYLGKCYSVIFFSATISP
IKYYVNMLGGDDNTYRLKLPSPFNKENLKVHISPINIRYSYRKRTLSSVKDKICGFIKQQ
IGNYMIFSPSYAYMEELYSHMEESKLEEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFC
VLGGMFSEGIDLPGDQLIGSIIIGVGYPMVDMTNEVIKDFYKEDGYDYAYVFPGINKIQQ
AVGRVIRTETDKGRVLLIDDRYINNKYSVLLPNEWYPINKY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattcttatacgagagtctgtgagaaatttagtagaattttgcttgaaaaaa
ggtgatatagataataggttttctggaagtgctagggcagtagagggagtaagagcacat
caaaagcttcaggaagataacggaagggtttatgagaactatgaaaaggaagtatattta
actcatgaattcgagacgaataaaagcttgatctatattgaaggaagagcagatggaatt
ataacagaaaaagataaagttataattgaagaaataaaatcaacttataagaattttgca
tacattgatgatttgaatgaggtccattgggctcaggcaaaggtgtatgcttttatttat
ggaaatcaaaataatcttgaagaaatttatgtacgattatcctacatgcagttagaaacg
aatgaggttaagagttttgaaaaaaaatttactataggagaattagaagaatttatatct
gatttattaagagaatatgagagatttagtgttctaatatttaaatggaaaaacattaga
gatgaaactataaaagtactaaattttccttttgaaaaatacagagaaggtcaaaggaaa
cttattaatgtttcatatcaaactataaaagaggaagaaatattatttgttcaggcaccg
acaggcataggaaaaactatatcaaccatattcccagctgtaaaggctataagcgaagga
atcggagaaaaaattatatatttgacggcaaagacgataaatagggaagttgctgaagaa
acttttgaaagattgcgtcaagaaggcttgaaatttaggactatcacaattacggcaaaa
gagaaaacatgtattaatgatgattttgattgcaatccagagaagtgcatatatgccaaa
gactattatggtaaagtaaaaaaagtaattacaaatgttatcgaaagggaagaaagaatt
tccacggaaatattgaaggaatatgccgaaaaatatcaggtatgcccatttgagctatct
ttagatataagtacttattgtgatggaattataggtgattataattacatctttgatcca
agagtatctttgagtagagttctagaaagcaaaggaaatatagttttggtggatgaagca
cataatttaattgatagatcaagaaatatgtattccgcatccttatataaaagtcaaatt
ctaaattgcaaaaagataactaagggtaaattaaataaactacattctttattgggaaag
attaatgattatttcattaatttaagaaatgaatgcgaccatagagaagtgaaatcattt
tatgaagaggaacatcctaaggaattgagtaagtatttgcagttatacttaaaagaaagt
gaagaagtgctagtaagaggaaatagatttgatggttatgaagatatattgaaattatat
tttgatatgaatgcttttacttctacgacacagctctatgatgaaaattataggacttgt
atagaaaaggattctcaagaaatcaagttgactttatattgtgtaaatccagctaagaat
ttaagagaatatttagggaaatgctactcagtaatatttttttctgcaactatatcacca
ataaaatactatgtaaatatgctgggcggagatgataatacatataggctaaagcttcca
tctcctttcaataaagaaaacttaaaagttcatattagtcctattaatattagatattca
tatagaaaaaggaccttatcatcagtgaaagataaaatttgtggctttataaagcagcaa
attggaaactacatgattttttcaccatcatatgcatatatggaagagttatatagccat
atggaggagtcgaagctagaagaatttaatcttatgaaacagaaacctaatatgacggag
gaagaaaaaagtgaatttttaagaagatttaagaatagcaataatttattaatgttttgt
gtgcttggagggatgttttcagaaggaatagatttgcctggtgatcagttaattggaagc
ataataattggagtaggatatcctatggtagatatgacaaatgaagttataaaggatttt
tataaagaagatggttatgactatgcgtatgtatttccaggaataaataaaattcagcag
gctgtaggaagagttataagaactgagacggacaaaggaagagttctgcttattgatgat
agatatataaataataaatatagtgttcttttaccaaatgagtggtatcctataaataaa
tattaa
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