Clostridium beijerinckii ATCC 35702: Cbs_5029
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Entry
Cbs_5029 CDS
T03415
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbz
Clostridium beijerinckii ATCC 35702
Pathway
cbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cbs_5029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbz03019
]
Cbs_5029
03009 Ribosome biogenesis [BR:
cbz03009
]
Cbs_5029
Enzymes [BR:
cbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cbs_5029
Messenger RNA biogenesis [BR:
cbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cbs_5029
Ribosome biogenesis [BR:
cbz03009
]
Prokaryotic type
rRNA helicases
Cbs_5029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIU02470
LinkDB
All DBs
Position
5913437..5915014
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AA seq
525 aa
AA seq
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MNDNQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL
PIITKMSDNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRK
GDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQT
LLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL
DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIAT
DVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQN
VTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIELTESYDAVSIISA
LMKMKFENEIVFDYSSNKLEAPKKEDVRLFFSVGKRDGLTPKVLINYIKDMTKVNASAIG
QIDLMENFSFVTVDESISSKILKNCPGGKINKKKVNVEVANKRKR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataatcaatttgctacattaggtcttaaagagagtattgttaaggcaatatca
gaccttggttttacaaaaccatctcaaatacaagaacaaagtatccctgtaacacttagt
ggcgctgatttaatagggcaggcacaaactggtaccggaaaaactgcagcttacagctta
ccaattatcaccaagatgagtgataatagaggaatcaaatctcttattttagcaccaaca
agagaacttgctgttcaagttaatgaggagatacaaagactttctaaatatgagaaaatt
gtaactctagctgtttatggtggagattcaatcgacagacaaatcagagcactaagaaaa
ggtgatgtcgatattgtagttggaacacctggtagaatattagatcttgtaaaaagaaaa
tgccttcatttagaaagtatagaatttctagtactagatgaagctgacgaaatgcttaac
atgggattcatcgatgatattcaagaaattcttagtcatacaccatctgaaagacaaact
ttattattttcagcaacaatgcctgatccaatagcaaagttggctaaaaagtatatgaaa
ccagatgctaaacttgttagtattaagaggagttcattaactgtatctaaaattgagcaa
agttattttatgattaataataagcatagattagaagctctttgtaggttacttgatcta
gataatcctagttcggctataatattctgtagaactaaaagaggcgttgatgagcttgta
caagagctacaatcaaaaggttatatggttgaaggtatgcatggagatatgacacaagct
cacagattaactactttaaataaatttaaagaaggtacactaaatctattaatagctact
gatgttgctgctagaggtatagatgtagaaggtgtgactcatgtatttaactatgattta
cctcaagatgtagaatcatatgttcacagaattggtagaactggtagagcaaataaaagc
ggtacagcttattctttagtaactccaaaggatttttcaatgcttaaacaaattcaaaat
gttactaaaagttcaatcacacaaaagccagttccaactgcagaagaaattaataataaa
aaatttaaggacatgatgtcagaggttgagagtactattaaagctggtgatcttactaag
tttataccaagtgcaatagaattgactgaatcttatgatgcagtatcaattatttcagct
ctaatgaaaatgaagtttgaaaatgaaattgtatttgattacagttcaaacaaattagaa
gctcctaaaaaagaagatgttcgtttatttttctctgtcggcaaaagagacggtttgact
ccaaaagtattaattaattatattaaagatatgacaaaagttaatgcttcagcaattggt
caaatagaccttatggaaaacttctcatttgtaactgttgatgagtctatatcttctaaa
atattaaaaaattgtcctggtggaaaaattaataagaagaaggttaatgttgaagttgct
aataagcgtaagagataa
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