Chlamydia caviae: CCA_00240
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Entry
CCA_00240 CDS
T00125
Name
(GenBank) exoribonuclease, VacB/Rnb family
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cca
Chlamydia caviae
Pathway
cca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCA_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cca03019
]
CCA_00240
03016 Transfer RNA biogenesis [BR:
cca03016
]
CCA_00240
Enzymes [BR:
cca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CCA_00240
Messenger RNA biogenesis [BR:
cca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCA_00240
Transfer RNA biogenesis [BR:
cca03016
]
Prokaryotic type
tRNA degradation factors
CCA_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AAP04991
UniProt:
Q824B3
LinkDB
All DBs
Position
complement(252783..254819)
Genome browser
AA seq
678 aa
AA seq
DB search
MVKKIRKRKPQGFRRSSKQILISGVLFVHAKKGFGFVTPDHPEEYPFDIFIPARDLKGAL
DGDHVIVSLFPNSKEGEKRKGMIHQVVSRGKTVLVGTITSIIDGTTALVCVNALGPDIPV
KAKLLPKRSYKLGDRLLLSTPAWKEKPESKEPPPLEMLEFIGNISNAKADFPCIKAEYAI
EEEFPEAVIEETSHFSQKHINQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY
ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAV
SVFMTFTKEGHLSDYEVFRSVIRSKYRMTYDEVDEIVENKQPHPISKTLLAMAELSEKFA
DIREKRGCIRLVLPSFTMALDNLQEPVALIETRQTLSHKLIEEFMLKANEVIAYHISHQG
VTLPFRIHESPNDESLLSFQEMAKGMGFDIIMTPAQEPDYQYLLQESSAGHPLEAILHSQ
FVRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLVVHRLLFHPMSIEETRLEHIVR
ACSTQERIAAKAEFAFENLKKTRFLDKFLKEQPETIYKGFIITTTPEGISFTVPEFCQEG
FIPAAQLPKEYSLKKKTSPDDLPSKMRPGATIEVKLSEVNLLNQAITWSLVTKTPKKSEK
KSSNPEKKPRTRRKRKTE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
ttggtgaaaaaaataagaaaaagaaaaccccaaggctttagaagaagctctaagcaaatc
ttaatttccggcgtcttatttgttcacgctaagaaaggctttggatttgtcacacctgac
catcctgaggagtacccctttgatatttttattcccgcaagagaccttaaaggtgctcta
gatggagatcatgttatcgtctctcttttcccaaattctaaagaaggagaaaaaagaaaa
ggcatgatccaccaagttgtttcaagagggaagacagttcttgtaggaactataacctca
ataattgatggaacaaccgctctcgtttgtgttaatgccttaggcccagatattcctgta
aaagcaaaacttctccctaaacgttcttataaacttggggatcgtttattacttagcacc
cccgcatggaaggaaaaacccgaatctaaagaacctcctccattggaaatgctcgaattt
atcggcaatatctccaatgctaaagcggacttcccctgcataaaagctgaatacgctatt
gaagaggaatttccggaagctgttatcgaagaaactagccatttctcacaaaaacatatc
aaccaagctctacgatcacgaaaagaccttcgcgatctcctttgctttactatcgattcg
ataactgcaaaagatttcgatgatgccgtatcgctaacttatgacaataatgacaactat
attcttggcgtccatattgcagacgtctctcactacgtaacgccacattctgctctagat
caagaagcaagtaaaagatgcaactctatctactttcctgggaaagtaatccccatgttg
ccttcagctctttctgataacctttgcagcttaaaacccaacgtagataggcttgctgtt
tctgtattcatgactttcactaaggaaggccatttatccgattacgaggtatttcgtagc
gtaattcgcagtaaataccggatgacctatgatgaagtagatgagattgtagaaaataaa
caaccccatcctatatcaaaaactctccttgctatggcagagttaagcgaaaaattcgca
gatattagagaaaaacgtgggtgcatacgccttgtcctaccctcatttactatggctctc
gacaacctacaagagcctgtagctcttatagaaacacgacaaacgctatcgcataaactt
attgaagagtttatgcttaaagctaacgaagtcatcgcctaccatatttcccaccaggga
gtcactctaccatttagaattcacgaatctccaaacgatgaaagcctactttccttccag
gaaatggcaaaaggtatggggtttgatattattatgaccccagctcaagaacccgattac
caatatctactacaagaaagctctgcagggcaccctctagaagccattctacattcacag
tttgtccgcagcatgaaaactgcctcatattcaacagaaaataaaggccattacggatta
aaactcgacttttatacacactttacaagcccaatccgtcgttatatcgatcttgttgtg
catagactgctatttcaccccatgtcgatagaagaaactcgcctagaacacatcgtacga
gcctgttcaacacaagaacgcatagccgcaaaagctgaatttgctttcgaaaatcttaaa
aagacccgcttcttagataagttcttaaaagaacaacctgaaacaatttataaaggcttc
attatcacaacaactcctgaagggatttccttcacagttccagagttttgccaagaaggt
ttcatcccagcagcgcaattacctaaagaatactccttaaaaaagaaaacctctcccgat
gatcttccaagtaaaatgcgccccggagcaactatagaggtcaaactctcggaagtaaat
ctcctcaatcaggcaattacttggtcgttggttacaaaaacgccaaagaaaagcgagaaa
aaatcatccaatccagaaaagaaacccagaactagaagaaaaaggaaaacagagtaa
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