Chlamydia caviae: CCA_00877
Help
Entry
CCA_00877 CDS
T00125
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cca
Chlamydia caviae
Pathway
cca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCA_00877 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cca03400
]
CCA_00877 (mfd)
Enzymes [BR:
cca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCA_00877 (mfd)
DNA repair and recombination proteins [BR:
cca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCA_00877 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
ADDB_N
UB2H
AAA_19
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAP05618
UniProt:
Q821R1
LinkDB
All DBs
Position
1002691..1005948
Genome browser
AA seq
1085 aa
AA seq
DB search
MAMDFDPVNLNLPILSEITNASIPLLIENIRPGARGFLAAKFFRERDESVVMITTRARID
DLFEDLSSFLGCAPVEFPSSEIDLSPKLVNIDAVGKRDKVLYELYEKKAPLFCITTLKAL
LEKTRSPKDTGHQHLDLQVGDVLDPEMMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFP
LSSQEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKISISPATKDSGKEALSHCLLDYFKT
PPVFIFDNLSMLEDDFSEISGTLSSLPNRFLSITDLCERALQSPTIFFEEKSFPNVRNLK
NNEVNIEVFHRDVKASRLVVPFVYPNETIDDQENPLLGFLQKLQEYVPHKGQPFNVALYN
TKAKSLKEARALVETLSGNSIHIYEKPGNLSTSFALVEERFAAISLAEFSATKVLRRQKQ
RNYFSVTTEEVFVPIPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADKARLYVP
SDQAYLISRYVGASDKAPDLHNLNGSKWRRSRDLSEKSLVLYAEKLLQLEAQRSTIPSFI
YPPHGEEVIKFAENFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPINIAVLSRFSERKSMKKIFEDTAK
GDIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPKVDCLTVSATPIPR
TLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIES
IFRLGNTIRTLIPEARIAVAHGQMSPDELASIFQKFKDQEINILVATALIENGIDIPNAN
TILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTTPLLFNDDVKIE
FPYKSRIPDTYIDLASIRIEFYQKIGGAEDAEQLELIKEEMRDRFGPLPEEVLWLFALAQ
VRLFALHHNISSIKGTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLISEVLASIEKAFP
LKTPR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcgacccagttaatttaaacctacccatcttatctgaaataactaac
gcctctattccattactaatagaaaatatccgtcctggagctcgcggattcttagccgct
aagtttttccgcgagagggacgagtctgtggtaatgattaccacacgcgctcgtattgat
gatcttttcgaagatctctcctcatttttaggatgtgcccctgttgagtttccctcatcc
gaaattgatctatctcctaagcttgtcaatattgatgctgtgggtaaacgtgataaagtt
ctttatgaattatatgaaaagaaagctccgttattttgcataaccacgttaaaagcttta
ctagagaaaactcgttcacctaaagatactggtcatcaacatttagatctccaagttggt
gatgtgctagatcctgaaatgatgatcgatctatgcaaaaatttaggctatcgccatgaa
actcttgcgagtgataaaggagagtttgcttatagaggggggattattgatatctttccg
ttatcttctcaagaaccttttcgcatagaattttggggagaaaagatcatctccatacgt
cctttcaacccttctgaccaactctcaacaggaaaagtttccaaaatttcgatttctccg
gctacaaaagattcagggaaagaagcgttatcacattgcctattggattattttaaaaca
ccccctgtctttatctttgacaatctctcgatgttagaagatgatttttctgagatttcg
ggaacattgtcttcgttgcctaaccgctttctatcgattacagatctctgtgaacgcgct
ttgcaatcccctactattttctttgaagagaaaagcttccctaatgttcgcaatcttaaa
aacaatgaagtaaatatcgaagtctttcatcgtgatgtaaaagcttctcgcctagttgtt
ccttttgtttatcctaatgagactatcgatgatcaagaaaatccccttctgggttttcta
caaaaacttcaagaatatgttcctcataaaggccaaccctttaatgtagctctctacaat
acaaaagcaaaatctttaaaagaagctcgtgctttagtagaaactctatcgggaaattct
atacatatttacgaaaagccaggaaatctctctacaagctttgctctagttgaagaaaga
tttgcagcaatttcccttgcagaattctctgctacaaaagtgttgaggagacaaaaacag
agaaattatttttctgtaactaccgaagaagtttttgttcctattcctggcgagaccgtt
gtgcatcttcacaatggtatcggcaaatttatcggaatagaaaagaagccaaatcactta
aatattgaaacagactatctcgttcttgaatatgctgataaagctaggctgtacgtccct
tctgaccaagcttatttaatttcacgctatgtaggggcctctgataaagctcctgatctt
cataatcttaatggctctaaatggagaagatctcgagatctctctgaaaaatcccttgtg
ctctatgctgaaaagcttcttcaactagaagcacagcggtctactatcccttcatttatt
tatcctccccacggtgaggaggtgattaaattcgcggaaaactttccctatgaggaaact
cctgatcaattaaaagctatcgagcaaatttattctgatatgatgtccgataagctaatg
gatcgattaatttgtggtgatgcgggatttggaaagacggaagtcatcatgcgcgctgct
gtaaaagctgtctgtgatggccatcgacaagttattgtcatggtacctacaacaatttta
gcgaatcagcattatgaaactttctcacaacgcatggcaggattaccaataaatattgct
gttctttcacgattttcagaaagaaaatctatgaaaaagatcttcgaggacactgctaaa
ggcgatattgacatcctaattggaacacacaagctgataaacaaaaaccttgaatttaaa
aatcctgggttattgattattgatgaagaacagcgtttcggcgttaaagttaaagacttc
cttaaggaacgttatcctaaagtagactgcctgacagtatccgccacaccgattcctaga
acattgtatatgtctttatcgggtgctcgtgatctctctttaattactatgcctccatta
gacaggctccccgtctctacttttgttttagaacataatgaagagactttatccgcagcc
ttacgtcatgaattacttcgtggtggtcaagcttatgttattcataaccgtattgaaagt
atttttagattaggaaataccatacgaacattgatccccgaagcacgtattgctgttgct
cacggacaaatgtccccagatgaactagcttctatattccaaaaatttaaagaccaagaa
atcaacattcttgtagcaacagcattgatagaaaacggtatcgatattcctaatgccaat
accattttagtagatcaagccgataagtttggtatggcagatctttaccaaatgaaaggt
cgggtaggaagatggaatagaaaagcttactgctatttcctagtgtctcatttagataga
ttatcaggtcccgctgcaaaacgtttagaagctttgaataaacaagaatatggcgggggg
atgaaaatcgccctccatgacttagaaattcgtggagctgggaatatcttaggaaccgat
caatcagggcacataagtgccatagggttcaatctctactgcaagctattgaaaaagact
gtggcagcattgaaaaacaatactactcctttgctgtttaacgatgacgtcaagatagag
ttcccttacaaatcacgtattcccgatacctatatcgatctggcatctatacgtatagaa
ttctatcagaaaataggcggtgctgaagatgctgaacaactcgagctcataaaagaagag
atgcgtgatcgctttggtcctcttccagaagaggtactatggttatttgctttggctcaa
gtacgcctattcgctctacaccacaacatttctagtattaaaggtacgggaaatgcattg
tatattcaacaatgtcatggaaaaacagagcaaataaagaaaacattaccctattcttta
tctccaactccagaattgttaatatctgaagttttagcatctatagagaaagcttttcct
ctaaaaacccctcgttaa
DBGET
integrated database retrieval system
