Clostridium cadaveris: KQH81_04795
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Entry
KQH81_04795 CDS
T07934
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ccaa
Clostridium cadaveris
Pathway
ccaa02020
Two-component system
ccaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccaa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KQH81_04795
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KQH81_04795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaa03021
]
KQH81_04795
Transcription machinery [BR:
ccaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KQH81_04795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_12
HTH_17
HTH_11
HTH_Tnp_ISL3
Sigma70_r4
HTH_36
HTH_23
HTH_3
HTH_21
HTH_IclR
HTH_38
HTH_28
Sigma70_r4_2
MarR
PCI
Motif
Other DBs
NCBI-ProteinID:
UFH66594
LinkDB
All DBs
Position
1047105..1048472
Genome browser
AA seq
455 aa
AA seq
DB search
MDFNLNITQEQKLIMTQQMQLSVKILQMSGIELQEYIDKEIQENPVLDAKYEELTGKDNK
DDIDYKELVKFLEFDNYGSQSYEHYDNSDEVSPFQFISNQKSFGEFLEEQVLELNKDEYT
KTLCRYIINSLDEKGYLAVPLKSLSEELHISEDDMEDILYIIQSLEPYGVGARDLKECLK
IQIKCKGIFDENLLEIIDNHLEDIAENRYANIAKSLKITAKEAQNYGDAIKKLEPKPSRG
FYNGEETKYIAPDAYIRNIDGEYFIIMNDSLAPKLSVNSIYKEILKMDKDKDAVKYVKDK
MNSAMFLMKSVESRKSTIYRVLEKIVEKQKDSLDYGEDHLHPMTLKEVAEELNLHESTIS
RAIRDKYVYTPKGIIKIKKFFTQGIVANGFSEDISTVNIKNAIKKLIDEENKKKPISDQN
ICDKLNDMNMNISRRTVAKYREELGIKSSSKRKRL
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggattttaatcttaatattactcaagagcaaaagttaataatgactcaacagatgcag
ctatcagttaaaattcttcaaatgtctggtatagagcttcaagaatacattgataaagaa
attcaagaaaatcctgtgttggatgcgaaatatgaagagcttacaggaaaagataataaa
gacgatattgactacaaagaacttgtaaagttcttagagtttgataattatggatctcaa
agctatgagcattatgataatagtgatgaggtgtcaccttttcaatttataagcaatcaa
aaaagttttggggaatttttagaagagcaggtattagagcttaataaggatgagtatacc
aaaacattatgcagatacataataaacagtttagatgaaaaaggttatctagcagttcct
cttaaaagtttgtcagaggagcttcatatttcagaagatgatatggaagatattctttat
ataatacaatctttagagccttacggagtaggagctagagatttaaaagagtgtttaaaa
attcagattaaatgtaaaggtatttttgatgagaatttactagaaataatagataatcat
ttagaagatatagctgaaaataggtatgctaatatagcaaaaagcttgaaaattactgca
aaagaggctcaaaactatggagatgccataaaaaaattggaaccaaagccaagcagagga
ttttataatggagaagagaccaaatatatagctcctgatgcgtatataaggaatattgat
ggagaatactttataataatgaatgattctttagcacctaagctttctgtgaatagtata
tacaaagaaatactgaaaatggataaggacaaggatgctgttaaatatgtaaaagataag
atgaatagtgccatgtttcttatgaaaagtgtagaaagcagaaagagtacaatctataga
gtccttgaaaagatagttgaaaaacaaaaggattctttagattatggagaagatcatctt
catcctatgacattaaaagaagttgctgaagaacttaatttacatgaatcaactatcagc
agagctataagagacaaatatgtttatacaccaaaagggataataaaaattaaaaaattt
tttacacaaggaatagttgcaaatggtttttcagaagatatatctacagtcaacataaaa
aatgcaataaagaaacttatagatgaagaaaacaagaaaaaacctatttcagatcaaaat
atatgcgataagcttaatgatatgaacatgaatatatcgagaagaactgtagcaaaatat
agagaagaacttggaataaaatcctcgagtaagagaaaaagactttaa
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