Clostridium cadaveris: KQH81_06045
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Entry
KQH81_06045 CDS
T07934
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccaa
Clostridium cadaveris
Pathway
ccaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQH81_06045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaa03019
]
KQH81_06045
03009 Ribosome biogenesis [BR:
ccaa03009
]
KQH81_06045
Enzymes [BR:
ccaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQH81_06045
Messenger RNA biogenesis [BR:
ccaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQH81_06045
Ribosome biogenesis [BR:
ccaa03009
]
Prokaryotic type
rRNA helicases
KQH81_06045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UFH66086
LinkDB
All DBs
Position
1318171..1319607
Genome browser
AA seq
478 aa
AA seq
DB search
MRSNFEKFKLSEDILKAIGELGYKKPSDVQEKVIPEIMFNKDVIVKSQTGSGKTAAFGIP
LCEKIEWNENKPQVLILTPTRELAVQIKDDLLNIGRFKRLKTIAVFGKQPFSEQAAALKQ
RTHIVAGTPGRVLDHIDRGTLDLSKIKYFVIDEADEMLNMGFIGQVEGVIRRIPKNRVTM
LFSATIPEEIESLCKNHMRRPVKIEIKAQKLITDNIEHNLYRVDDKEKLEALNKILVGEV
PKTTIVFCRTKDNVDLTYDYLNKKGYSIGKIHGGMLQKERLEVMEAFRRGDFRILIATDI
AARGIDIEGITHVINIDVPMEKEAYVHRIGRTGRAGSKGKAITFATQYEDRFLNDIFDYI
GFSIEESLMEEISKEEIEKSVKVLTSKPKAKNVKSKSVNKGITKIYLNGGKKKKIRVVDI
VGAVSRIEGVNGDDIGIIDIQDMGSYVEILNGKGNLVMTALKDSTIKGKKLRVEKARK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtaattttgaaaaatttaaattaagtgaagatatattaaaagctataggagaa
cttggatataagaaaccatcagacgttcaggagaaggttattcctgaaatcatgtttaat
aaagatgttattgtaaagtcacaaacaggtagtggaaagacagcagcttttggtattcca
ttatgtgaaaaaatagaatggaatgaaaataagcctcaggtattgatactaactccaact
agagaattagcagttcaaataaaggatgatcttttaaatataggtagatttaaaaggctg
aaaactatagcggtgtttggaaagcagcctttctcagaacaggcagcggcactaaagcag
agaactcacattgtagctggaacaccaggaagggtgcttgaccatatagatagaggaact
ttagatttgagcaaaataaagtattttgtaatagacgaagctgatgaaatgcttaatatg
ggttttataggtcaggtagaaggagttataagaagaatacctaaaaatagagttactatg
ctgttttcggcaacaataccagaagaaatagaatccctttgcaaaaatcatatgagaaga
cctgtaaagatagaaataaaagctcaaaagcttataacagacaatatagaacataatttg
tacagagttgatgataaagaaaagttggaagcattaaataaaatattagtgggagaagtt
cctaaaacgacaattgttttttgtagaacaaaggataatgttgatttaacatatgattat
ctaaataaaaagggatattcaattggaaaaattcatggaggtatgcttcaaaaagaaaga
ttagaagtaatggaagcttttagaagaggggattttagaatacttatagcaacagatata
gcagcaagaggaatagatatagaaggaataactcatgtaataaatatagatgtacctatg
gaaaaggaagcttatgttcacagaataggaaggacaggaagagcaggaagtaaaggtaaa
gctataacctttgcaactcaatatgaggatagatttttaaatgacatatttgattacata
ggattttctatagaagaaagtttaatggaggaaatatctaaagaggaaattgaaaagtcc
gttaaagtattaacctctaagcctaaagcaaaaaatgtaaaatctaaatctgtaaataaa
ggcataactaagatttatcttaatggtggaaagaaaaagaagataagagtagtagacata
gttggagctgtttctagaatagaaggagtaaatggtgatgacataggaattattgatata
caggatatgggttcttatgttgagatactaaatggtaaaggaaatctagtaatgacagca
ttaaaagattcaactattaagggaaagaagctcagagtagaaaaagcgagaaaataa
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