Clostridium cadaveris: KQH81_13465
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Entry
KQH81_13465 CDS
T07934
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccaa
Clostridium cadaveris
Pathway
ccaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQH81_13465 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaa03021
]
KQH81_13465 (rho)
03019 Messenger RNA biogenesis [BR:
ccaa03019
]
KQH81_13465 (rho)
Transcription machinery [BR:
ccaa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KQH81_13465 (rho)
Messenger RNA biogenesis [BR:
ccaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KQH81_13465 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
OB_RNB
AAA_25
AAA_22
ATPase_2
HeH
AAA
DUF5855
Motif
Other DBs
NCBI-ProteinID:
UFH66696
LinkDB
All DBs
Position
complement(2826362..2827762)
Genome browser
AA seq
466 aa
AA seq
DB search
MTLVELRKIAKDNNIKNISKLKKAELIEAIKSLESSNANPVSIERNGVVLKEKITPKSSN
EEVPTRSENSVKSSIDNQDDKKQKLKNMINESDSVSGILDINENNSFGFLRCENYLTGSD
DVYVSPSQIRRFNLRTGDEVRGKVRTPKEGEKFKALLYVESVNGERPEKAVMRTPFEKLI
PIYPQERLRLETDDSKDLSSRLMDIICPIGKGQRGVIVAPPKAGKTTLLKKVAQNISKNY
PNVKLIVLLIDERPEEVTDMQRSIQGEVVYSTFDEEPMNHTKVAQLVLERAKRLVEYGDD
VVILLDSLTRLARACNLTITPTGRTLSGGLDPGALIMPKKFFGAARNIEKGGSLTILATA
LVETGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAIDVYKSGTRKEELLFTDDEKDA
SFAVRRVMYRDGNIEDVTENLINYLSKTANNNEFVEIIKKSDMFSK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggttgagcttcgtaaaatagctaaagacaataatataaaaaatataagcaag
ctaaaaaaagccgagcttatagaggctataaaaagcttagagtcatctaatgctaatcca
gtttctatagaaagaaatggagtagtactaaaagaaaagataactccaaaatcaagtaat
gaagaagttcctacaagaagcgagaactcagtaaagagttcaatagataatcaagatgat
aagaaacaaaaactaaaaaacatgataaatgagtctgactcggtgtcgggaatcttggat
ataaatgaaaataatagttttggattcttaagatgcgagaattatcttactgggagtgac
gatgtgtatgtttctccttctcaaataagaagatttaatcttaggacaggtgatgaagta
agaggaaaagtgagaactccaaaagaaggagaaaaatttaaagctcttctttatgttgaa
agtgtaaatggtgaaagaccagaaaaggcagttatgagaacgccttttgaaaaacttatc
cctatttatccgcaagaaaggttaagattggaaactgatgattcaaaagacttgtcttca
agactaatggatataatatgtcctattggtaaaggacaaagaggtgtcatagtagcccca
cctaaagctggaaagactactttactaaaaaaagtagctcaaaacatatctaagaattat
ccgaatgtaaaactgatagtgcttttaatagatgaaagacctgaagaagttacagacatg
caaagatcgattcaaggagaagttgtttattctacctttgatgaggaacctatgaatcat
actaaagttgcgcaacttgttttagaaagagcaaagaggcttgttgagtatggtgatgat
gtagttatacttttagatagtttaacaagacttgctagagcttgcaatcttacaataact
ccaacaggaagaactctatctggaggattagatccaggagctcttataatgcctaaaaaa
ttctttggggcagcaagaaatatagaaaaaggcggaagtcttactatactagctactgca
ttagttgaaacaggaagtcgtatggatgacatgatattcgaagaatttaaaggtactgga
aatatggaagttcatttggacagaaaacttcaagagagaagaatattcccagctattgat
gtatacaaatcaggaacaagaaaagaagaacttttatttactgatgatgagaaagatgct
tcttttgcagttagaagagtaatgtatagagatggaaacatagaagatgtaactgaaaat
cttataaattacttatcaaagacagctaacaataatgagtttgtagagataataaaaaag
agtgatatgttctcaaaataa
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