Clostridium cadaveris: KQH81_16000
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Entry
KQH81_16000 CDS
T07934
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccaa
Clostridium cadaveris
Pathway
ccaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KQH81_16000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaa03400
]
KQH81_16000 (mfd)
Enzymes [BR:
ccaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KQH81_16000 (mfd)
DNA repair and recombination proteins [BR:
ccaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KQH81_16000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF6189
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFH64737
LinkDB
All DBs
Position
complement(3306736..3310254)
Genome browser
AA seq
1172 aa
AA seq
DB search
MRLEGLMKPFKTDKKYEELMLQIEREKFPIGIYGVSESARSYIINGIYEGIDKPLFIFTS
SDMEAKNLYEDLSFYISEVYYLPSKDVVFYNIDAISGDLRWERLKVIKEMVSKGKKIIVT
SIDVLSSRYTPIELFKEYTTTLKVGKQIDLIELSERLVQCGYERMDMVDGKGQFSIRGGI
LDIFPTISVYPYRIELFDDEIDSIRTFNVESQRSIDKVKRIEIFPAKEVILKNQDILRGY
NAIEEDYQKFISLKENKKNKSLVDKIKKIVKRNLEELKEICSFETIESYIPYFFEKTSTF
FDYIGDSYIIIDDIQRCNGKLESVYTEFEYSYSAFLQRGDILPRQGELMIPKEILMDTLE
LGKVFTIESIAKSTSILKPRALNNFSQITPSSYHGQLDLLIEDIKDKKQNGYKTLILSGT
RPRGERLVDTLRDRGLEARYSDSVDNIGFGEVVVTFGNLLKGYEYPEFKICVISDQEVFG
KAKRKTSKRASKQKGTSKIKSFAELKPGDYVVHTNHGIGVYKGIKQIEVQGKKRDYLDIT
YDKGDQLYVPVDQLDLVQKYIGSEGKAPKVNKLGGSEWTKAKAKAKKSINEIAGDLVKLY
ASRAALKGYKFSKDTPWQRQFEDEFPFQETPDQLTSLEEIKKDMESDKPMDRLICGDVGY
GKTEVALRAAFKAVMEGKQVAFLVPTTILAEQHYTNMKKRFSDFPIRIDMISRFRTTTQQ
KSTLKSVKEGNIDILVGTHRLVSKDIEFKDLGLLIIDEEQRFGVAQKEKIKSLKKNIDVV
TLSATPIPRTLHMSLTGVRDISVIETPPEERYPIQTYVVEYNDQLIKDAILRELNRKGQV
YFVYNRVEDIKNMASYLQKLVPEANVGIAHGQMTERELENVMMKFMDNEINILVCTTIIE
TGIDIQNVNTIIIYDSDRMGLSQLYQLRGRVGRSDRIAYAYFTYRKDKILTEVAEKRLKA
LKDFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMATIGYDLYCRMLEDTIKLIKGDIEK
EPIETVMDVKVDAYIPDKYIDDEVQKIEIYKKIAAIGSFDDLMDIKEELEDRFSTIPDPV
YNLMNIAYIRSMAKNFGIEEIREKGQEVVFQFDSRDSFNDKLMKAIMKKYNKNIIFKLGE
KPAFGFKLQTINREDMLGIFKNLMEYLKSEIE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgaggggctgatgaagccttttaaaacagacaaaaaatatgaagaattaatg
ttgcagatagaaagagaaaaatttcctataggaatatatggagtatctgagtcagcgcgt
tcatacataataaatggtatatatgagggcatagacaagcctttatttatatttaccagc
agtgatatggaagctaaaaatctttatgaggatttaagtttttatataagtgaagtatat
tacttaccatcaaaagatgtggttttttataatatagatgctatatcaggtgatttaaga
tgggaaagacttaaagttattaaagagatggtatctaaaggtaaaaagataatagtaaca
tctatagatgtacttagttcaagatacacacctatagaactttttaaagagtatacaacc
acccttaaagtaggaaaacagatagaccttattgaattgtctgaaagattggtacaatgc
ggatatgagagaatggatatggttgatggaaaaggtcaattttctatcaggggaggcata
ttagatatattccctaccatatcagtttatccatatagaattgagctatttgatgatgag
atagattctataaggacatttaatgtagaatctcagaggagtatagataaggtaaaaaga
atagaaattttccctgctaaggaagttatattaaagaaccaggatattttaagaggatat
aatgcaatagaagaagattatcaaaaatttatatctctaaaagaaaataaaaagaataag
tctcttgtagataagataaaaaagatagtaaaaagaaatttagaagaacttaaagaaata
tgctcctttgaaacaattgagagctatataccgtatttttttgaaaaaacctctacattt
tttgattatataggggatagttacataataattgatgatattcaaagatgtaatggcaaa
cttgagagtgtgtacacagaatttgaatacagctatagtgcattccttcagagaggagat
atactgccaagacagggtgagttaatgattcctaaagaaatacttatggacacattagaa
cttggaaaagtatttactatagaatctatagctaaaagcaccagcatactgaaaccaaga
gcattaaacaatttttctcagataactccaagtagttatcatggacagcttgaccttctt
atcgaagatataaaggataagaagcaaaatgggtacaagacacttatactttcaggcaca
agacctagaggagaaagactagtagatactcttagggatagaggactagaagcccgttat
agtgattctgtagataatataggatttggagaggttgtagtaacttttggaaacctttta
aaaggatatgaatatcctgaatttaaaatctgcgttatatcagaccaagaggtatttggg
aaagcaaaaagaaagacatcaaagagagcatctaaacaaaaaggaacttcaaaaattaag
agctttgcggaacttaaacctggtgattatgtagttcatacaaaccatggaataggtgta
tataaggggataaaacaaatagaagttcaaggaaagaaaagggattatttagatataacc
tatgacaaaggtgaccagctatatgttcctgtagaccagctcgatttggttcaaaaatat
attggcagcgaaggcaaggcaccaaaggtaaataagcttggtggaagtgaatggacaaaa
gcaaaagcaaaggctaaaaagtcaataaatgagatagctggagatttagttaaactatat
gcttcaagagctgcattaaagggatataaattttcaaaagatacaccttggcaaaggcaa
tttgaagatgaatttccattccaagagacaccagatcagcttacatccttagaagaaata
aaaaaggacatggaatctgataaacctatggacagacttatatgtggagatgttgggtat
ggcaaaacagaagtagcattaagagctgcatttaaagcggtcatggaaggaaagcaagtt
gcatttttggtgccaacaacaatacttgctgagcagcattatacaaatatgaaaaagaga
ttttcggattttcctataagaatagacatgataagcagatttaggacgacaactcagcaa
aaatcaactttaaagtctgtgaaagaaggaaatatagacatacttgtaggaactcacaga
cttgtatcaaaagatatagagtttaaagatttaggacttttaataatagatgaagagcag
agatttggagttgctcagaaagaaaagataaagagtttaaagaaaaatatagatgtagta
acgttaagtgcaacccctattccaagaacactacatatgtcacttacaggggttagggat
ataagtgtaattgaaactcccccagaggaaagatatcctattcaaacctatgtggtggag
tataatgatcagcttataaaagatgcaattttaagagaactaaatagaaaggggcaagtg
tactttgtttataatagagtagaggacataaagaacatggcatcatatcttcaaaagctt
gttccagaagctaatgttggtatagcacatggacagatgactgaaagagaactagaaaat
gtcatgatgaaattcatggataatgaaataaatatattagtgtgtacaactattatagag
actggaatagatatacagaatgttaatactattataatttatgattctgatcgaatggga
ttatctcagctttaccagcttagaggaagggttggaagatctgatagaatagcctatgca
tattttacttatagaaaggataaaattctaacagaggtcgctgaaaaaagacttaaggct
ttgaaggattttacagaacttggatcgggtttcaaaattgcaatgagagatttggagata
agaggtgcaggaaatatgatgggttctgcacagcatggacatatggctactataggttat
gatttatattgtagaatgcttgaagacacaataaagttaataaagggtgatatagaaaag
gaacctatagaaacagttatggatgtaaaagttgatgcttatatacctgataaatatatt
gatgatgaagttcaaaaaattgaaatatataagaaaattgcagctataggcagttttgat
gaccttatggacataaaagaagaattagaagacaggttctcaacgattccggatcctgta
tacaaccttatgaatatagcgtatataaggagtatggctaagaactttggtatcgaagag
atcagggagaaaggtcaggaagttgtattccagtttgattctagagatagttttaatgat
aagcttatgaaagcaatcatgaaaaagtataataaaaatataatatttaagcttggagaa
aagccggcttttggttttaaacttcagactataaatagagaagatatgcttggtatattc
aaaaatttaatggaatacttaaagtcggaaattgagtaa
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