Chryseobacterium camelliae: PFY12_06930
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Entry
PFY12_06930 CDS
T08762
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFY12_06930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccab03021
]
PFY12_06930 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccab03400
]
PFY12_06930 (rpoC)
Enzymes [BR:
ccab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFY12_06930 (rpoC)
Transcription machinery [BR:
ccab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFY12_06930 (rpoC)
DNA repair and recombination proteins [BR:
ccab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFY12_06930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WBV61851
LinkDB
All DBs
Position
complement(1505196..1509461)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTETMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPVKEDGEIVTRLIETSVGRILFNQIVPKQ
SGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPESDEIIAEADQIITEQLAKKIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIGAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILSVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDQALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSRKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaggactcaagaggggaagttcttaagccggaaactattaactacaga
acgcacaagcctgaaagagacggtttgttctgtgaaaaaatcttcggacctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttataaagggatcgtttgtgaccgt
tgtggtgtagaagttacggagaaaaaagtgcgtagagaaagaatcggacacatcggtctg
gttgttcctattgctcacatttggtatttccgctctttaccaaacaaaatcggttacctt
ttaggaattccttccaagaaattggatatgatcatctactacgaaagatatgtagtgatt
caacaaggtattgctaagaaattagacggttctgatttcgaaaacatggagttcttaaca
gaagaagagtacctggatatcatggaaactcttcctgtagaaaaccaatatcttgacgat
tctgatccaaacaaattcatcgctaaaatgggtgctgaagctgttgaggaattattaaaa
agaatcgatcttgatgcattgtctttcgacttgagacacaaagctcacaatgaagggtca
aaacaaagaagaactgaagctcttaagagattgaacgttgtagaagcattaagaggtgct
aatacaagaatgatcaacagaccggagtggatgattatgcgtgtacttccggttatccca
ccagaattaagaccattggttccgttggatggtggacgtttcgctacttctgacttaaat
gacctttatagaagagttattattagaaataaccgtttgaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataatacaagaaaatcttctgccgtaaaatctgaatcaaacagaccattgaaatca
ctttcagattcattgaaaggtaagcaaggtcgtttccgtcagaacttactagggaaaagg
gtagattactctgcgcgttcggtaattgttgtaggtccaaacttgcagcttcacgagtgt
ggtatccctaaagatatggcagctgaactttacaaaccgttcatcattagaaaactaatt
gaaagaggaattgtaaaaacagtaaaatctgcaaagagaattattgatagaaaagaacct
gtagtttatgatatcttggaaaacgtgatgaaaggtcacccagttctattgaacagggca
cctacgcttcacagactgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccgttagtaacaacagcattcaacgccgatttcgacggtgaccagatg
gcggtacacttaccgttaggtcctgaagcgatccttgaagctcagttattgatgttaggt
tctcaaaacatcttgaaccctgcaaacggttctccgattacggtaccttctcaggacatg
gttcttggtctgtatttcatgactaaagaattaagctctactgagacaatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaatcgcttatgctgaaggtaga
gtatctttaaatgctaaagtaagatgtagacttccggttaaagaagacggtgaaatcgtt
acaagactaatcgaaacttctgtgggtagaatcttgttcaaccagattgtacctaagcag
tcaggatatattaatgagcttttgactaagaaatcattaagaaacgttatcggtaagatc
cttgctgatacggatttccctaccactgtgaagttcttggatgcaatgaaagacttagga
tattcaaacgcattcaaaggaggtctttcgttctcattaggggatattgtagttcctgtt
gagaaaaagcagatgattgcacaatcaatcgaaactgtagacgaaattagagctaactat
aacatgggtctaattacagatacagaacgttataatcaggtaatcgacgtttggacaaac
acgaacgcaggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatatatgatgcttgactctggagcgaggggttctaaggaacagatccgtcag
ttatcagggatgagaggtttgatggcgaaaccgcaaaaagcaggttctactggagcggaa
atcatcgaaaacccgattcttgcaaactttaaagaaggtctttccatcctagaatacttt
atctctacccacggtgctcgtaaaggtcttgcggataccgctcttaagactgccgatgct
ggttacttaacgagaagattggtagacgttgcacaagacgttatcgttacggaagacgac
tgtggaactttaagaggtacagaagttactgcgcttaagaaaaatgacgagatcgttgaa
agaatctctgaaagaattttaggtagagtttctttacataatatttatgatcctgaaagt
gatgaaatcattgctgaagctgaccagattattactgagcaattagctaagaaaattgag
gaagctggattagaagctgttgaagtacgttcaccattaacttgtgaggctaagaaaggt
atctgtgcgaaatgttacggtagaaacttagcaacaggtaaaatgattcacatgggtgaa
gctgtaggggttatcggagcacaatcaattggggaaccgggaactcagcttacgttgaga
actttccaccaagggggtactgcgggtaacgtttcagaaaacccatctattgttgcaaga
agagacggtatcgttgaaatggacgaagtaagaacaattacttctgaagatgaaaacggt
aacacagctgaagttgtagtttctcgttcaacagaattcagattagttgctgataatgag
tctagaactccattaatggtagctaacgtaccttacggatctatattatctgtgaaacca
ggtgataaagtgaagaaaggagatacaatctgtagatgggacccgtataacgcggttatc
attgcagaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccaa
cttgagattgacgaacaaacaggattcgaagagaaagtaatctctgaatccagaaataag
aaagccgtacctactttgaaggtggtagactctaaaggagttgagcaaaaagcgtacaac
ttaccggtaggagcccacttaatggtaaacgatggtgaaaaaattaaggctggtaaagtt
ttaatcaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaatccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaattgatcgttgaagctaaa
actggtgaaagaaaaatttatttagttaaattatcaaaccagattctagtacaggagaat
gactttgtaagagctggttcgccactttctgacggttcaatcactccggacgatatctta
agaattaaaggtccaactgcagttcaggaatatctggtaaacgaaattcaggaagtttac
cgtttacaaggggtgaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgttgatggaggtgatactcagttccttgaaggagctcttgagcac
aagtatgatttcttggaagaaaacaacagagtatttggtcttaaagtagtagttgatgca
ggtgattctaaagaattcaagccgggtcagatgattactgcaagagaattgagagacgaa
aactctaaattgaagcgtgaagatcaggctttggttgaagtaagagaagctttacctgct
acagcaacgcctgtattgcaagggattacaagagcggctcttcagactaaatcattcatg
tctgcagcatcattccaggaaacaactaaagttcttaacgaagcagcagttgcaggtaag
gtagatgatcttaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagaataccagaatgtaattgtaggttctagaaaagaattcgaagacctt
aactaa
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