Chryseobacterium camelliae: PFY12_13985
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Entry
PFY12_13985 CDS
T08762
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY12_13985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccab03019
]
PFY12_13985
03009 Ribosome biogenesis [BR:
ccab03009
]
PFY12_13985
Enzymes [BR:
ccab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFY12_13985
Messenger RNA biogenesis [BR:
ccab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFY12_13985
Ribosome biogenesis [BR:
ccab03009
]
Prokaryotic type
rRNA helicases
PFY12_13985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WBV60136
LinkDB
All DBs
Position
3028542..3030248
Genome browser
AA seq
568 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDETSRKIQLLVLCPTRELCLQITKDIKNYSKYMRDIKTTAVYGGSSIMEQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVTGYRQKKEALKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSV
TKIEINEAKIPTGEDIVKAQVGGVFESLFEVHEDFFEFDDALIPDLSAFTKEELVHKLLQ
FQLKDIALYYKDRHDLMEQKLSSRDDDGGSRRDRRDRDRGRDRDRGDRNERSGDRRERGG
KPRRKNDDMVRFFFNLGKKDQLKKLDVLDIINKATSNGKSKKRAEIGDIEILEKFSFFEV
EKSFKGDLLSNISNMKFRGKDMRAEEAN
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgacattcttaaggcaattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgaaacgagtcgcaaaatccaattattggtgctttgtccgaca
cgagaattatgtcttcagattactaaagacataaaaaactattctaaatacatgagagac
atcaaaactacagcagtgtatggtggaagcagtattatggagcaaatcagatctttgaag
gataaaccgcaaattattgtgggaactccgggtagagttattgatttaattaatagaaaa
gcgcttgacttttcggctattcattggttggttttagacgaagctgatgaaatgctttca
atgggtttcaaagacgaattggaaacaattttgagcgagactcctgaaacgaaacagact
ttcttattctcggcgacgatgagtaaagaagtggaaagaatttctaagaattatctgaca
aaaccacacagaatttctgtaggttctattaacgaggttaagaagaacattaagcatgaa
tattatgtgaccggttaccgtcagaaaaaagaggctttgaagagattgatcgattcaaac
ccgaatcagtattcaatcattttctgcagaacgagaatggaaactcaggaagttgccgat
ttcctgatgcagaacggttatgcagcagatgcgcttcatggtgatctttctcaggctcag
agagatacggtaatgaagaagttcagattgaaaaacattgatatcctggtagcgacagac
gttgcagcaagaggactggatgtaaactctctgactcacgttatccattattctttacct
gatgatccggaagtattcgttcacagaagtggtagaacgggtagagcaggaaaagacggg
atttcaatcgctttgatcaagcctgaagaaagcagaaaacttaaacagataaaatcagtt
actaaaattgagattaacgaagctaaaattccgacaggagaagatatcgttaaagctcag
gtaggaggggtttttgaaagtctttttgaggtacacgaagatttctttgaatttgatgat
gctttaattcctgatttatcagcgtttacaaaagaagaattggttcacaaattacttcag
ttccaattgaaagatattgctctttattacaaagacagacatgatcttatggagcagaaa
ctaagcagcagagatgatgacggtggatcaagaagagacagaagagatcgtgacagagga
agagatcgcgacagaggagacagaaacgaaagaagcggagacagaagagaacgtggcgga
aaacctagaagaaagaatgatgatatggtaagattcttctttaatcttggtaaaaaagat
caattgaagaagcttgacgttctggatattatcaacaaagctacttcaaacggaaaaagc
aaaaaaagagctgaaattggagatattgaaattttagagaaattctctttctttgaagtt
gaaaaatcgttcaagggagatcttttgagtaatatttcaaacatgaagttcagaggtaaa
gatatgagagctgaagaggctaactaa
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