Chryseobacterium camelliae: PFY12_14020
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Entry
PFY12_14020 CDS
T08762
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY12_14020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccab03019
]
PFY12_14020
Enzymes [BR:
ccab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFY12_14020
Messenger RNA biogenesis [BR:
ccab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFY12_14020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
UvrD-helicase
Cas3-like_C_2
HEM4
P-loop_SecA
Phage_integrase
Flavi_DEAD
ATG11
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WBV60143
LinkDB
All DBs
Position
complement(3035374..3036675)
Genome browser
AA seq
433 aa
AA seq
DB search
MNFTDLNLIDPIAKAIQEQGYTNPTPIQEKSIPEIIKGRDFLGCAQTGTGKTAAFAIPIL
QNLSKNKTPNKNIKALILTPTRELAIQIEENINAYGKYLPLRHLVIFGGVKQGNQEAALR
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQKRQT
LFFSATMPAEIQKLAGSILNNPVKVEVTPVSSTAETIKQSVYFVEREDKLNLLTHILKND
ISDSVLVFARTKHGADKIAKKLQKDNISTEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKL
IGMKIPIIKDHPFHTDNLVAQKRDSNNKPVAAGGGRPQSSNSSRPPRNKKKPGTAAPAIG
FKKPKNKNFTRKK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagatcctattgcaaaagcaattcaggaacaagga
tataccaaccctactcctattcaggaaaaatcaattcccgaaatcataaaaggtagagac
tttctgggttgcgctcaaactggaaccggaaaaacagcagcatttgccatccctatttta
cagaatctttctaaaaataaaacgcccaataaaaatattaaagctttaatattaactcct
acaagggaattggcaatacagattgaagaaaacatcaatgcttatggaaaatatcttcct
ttaaggcatttggtgattttcggaggggtaaaacagggaaatcaggaagctgccctgaga
aaaggtgttgatattttggtcgctacaccaggtagattattagattttattgctcaggga
attatcagtctgaaaaaccttgaaatctttgttttggatgaagcagacaggatgcttgat
atgggttttgtacacgacgtgaaaagagtcatcaagcttttgcctcaaaaaagacaaact
ttgtttttctctgcaaccatgcctgcagaaattcagaagctggcgggttctattcttaac
aatcctgtaaaagtggaagtaacacctgtttcttcgactgcagaaacgatcaaacaatca
gtatattttgtagaaagagaagataaactgaatcttttgactcatattttaaaaaacgat
atctccgattcggttttagtttttgcaagaaccaaacatggagccgacaaaattgcgaaa
aagctgcaaaaagacaatatttccactgaagccattcatggaaataaatctcagaatgcc
cgtcagaatgctttaaacaatttcaaatccggaaaaacccgagtattggtagccactgat
atcgcggcaagaggaattgatattgacgagctgaaatatgtggtaaattttgaactttcc
gatgtctctgaaacgtatgttcaccggattggaagaacaggaagagcaggagcagaagga
acttctatttcttttgtggatggtttggacttattgaatttaaagaatactgagaaattg
atcggaatgaaaatcccgattataaaagaccatccgttccataccgacaatttggttgca
cagaaaagagactcaaataacaaacctgttgcagcaggaggcggcagacctcagtcgtcc
aattcatcaagacctcctaggaacaagaaaaagccaggaaccgcagccccagcgattggt
tttaaaaaacctaagaataaaaattttacaagaaaaaaataa
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