Cutaneotrichosporon cavernicola: CcaHIS019_0104640
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Entry
CcaHIS019_0104640 CDS
T09540
Symbol
PAB1, CcaverHIS019_0104640
Name
(RefSeq) uncharacterized protein
KO
K13126
polyadenylate-binding protein
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03015
mRNA surveillance pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CcaHIS019_0104640 (PAB1)
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0104640 (PAB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0104640 (PAB1)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0104640 (PAB1)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CcaHIS019_0104640 (PAB1)
mRNA cycle factors
Stress granule specific factors
CcaHIS019_0104640 (PAB1)
Spliceosome [BR:
ccac03041
]
Complex C
Other components
Complex C specific factors
CcaHIS019_0104640 (PAB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_RdRP1_2
YflT
Motif
Other DBs
NCBI-GeneID:
85491617
NCBI-ProteinID:
XP_060453012
UniProt:
A0AA48HYC5
LinkDB
All DBs
Position
1:join(1251623..1252081,1252141..1253700)
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AA seq
672 aa
AA seq
DB search
MSSDTASTAPAAAAPPSPTPAAAPAPAAAGSGPVQPAPTSTTGQQQPGSSASLYVGELDP
SVTEAMLFEIFNMIGHVASIRVCRDAVTRRSLGYAYVNYINAADGERALEHLNYSLIKNR
PCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENANSRG
FAFVHYETGEAAEAAIKSVNGMLLNDKKVYVGHHVSKKERQSKVEEQRAKFTNVFIKNLD
PEIDQNGLDDLFKPFGEIVSAALGKDDDGKGKGFAFVNYVSHEAAKAAVDELNDKDINGR
KLYVGRAQKRAERDEELRRLHDERRQENESKTAGVNLYVKNMDDEWDDDRLRQEFDFAGT
ITSAKVMRDDKAVSRGFGFVCFSSPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQAL
ESQMQQRNAQRLQYAAANGLGGPQGYMQTPMYGYPPMGPYGNPMMPVRGVVGGYPGAPPM
MGARPGARYPSGQPGAPVPMGYMPPNAQGAYPGMPPNYPVRPAGNARPPTAPAAARPGSS
PVGAQQGLPRGQVPAARPQAEGAAPQPRLNAQALARASPIEQKQMLGEAIYPLIHDSQPE
LAGKITGMLLEMDNAELLHLVESPAALTEKVDEALRVLEDWGKDGKEGDVEGEVEEKEVE
AEGEKGDEEKKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgacactgcttctaccgcccccgctgcggccgcgcccccctcgcctaccccc
gctgcggctcccgcacccgccgctgctggttcgggccctgtgcagcccgcgcctacctcc
acgactggccagcagcagcccggctcgtcggcgtcgctctacgtcggtgagctcgacccc
tcggtcactgaggcaatgctctttgagatcttcaacatgatcggccacgtcgcgtccatc
cgcgtctgccgcgacgctgtgacccgtcgttcgcttggctacgcctacgtcaactacatc
aacgcggcggacggcgagcgcgccctcgagcacctcaactactccctgatcaagaaccgc
ccgtgccgcatcatgtggagccagcgcgaccccgctctccgcaagactggccagggcaac
atcttcatcaagaaccttgacgacaagattgacaacaaggccctccacgacacgtttgcc
gcgttcggcaacatcctttcgtgcaaggttgccaccgacgagaacgccaactcgcgcggc
ttcgccttcgtccactacgagactggcgaggcagccgaggcagcgatcaagtcggtcaac
ggcatgcttctcaacgacaagaaggtctacgtcggccaccacgtctcgaagaaggagcgc
cagtctaaggttgaagagcagcgtgccaagttcaccaacgtcttcatcaagaacctcgac
cccgagatcgaccagaatggtctcgatgacctcttcaagccttttggcgagatcgtctcg
gctgctcttggcaaggatgacgacggcaagggcaagggcttcgcctttgtcaactacgtc
tcgcacgaggctgccaaggccgccgttgacgagctcaacgacaaggacatcaacggccgc
aagctctacgtcggccgcgcccagaagcgtgctgagcgtgacgaggagctccgccgcctc
cacgacgagagacgccaggagaacgagtccaagactgccggcgtcaacctctacgttaag
aacatggacgacgagtgggacgacgaccgcctccgccaggagtttgactttgccggcacc
atcacctcggccaaggtcatgcgcgacgacaaggctgtgtcgcgcggcttcgggtttgtc
tgcttctcgtcgcctgacgaggccactcgcgccgtccaggagatgaacggcaagatgatc
ggcaccaagcccctctatgtctcgctcgcgcagaagaaggaggtccgccgccaggctctc
gagtcgcagatgcagcagcgcaacgcccagcgtctccagtacgccgctgccaacggtctc
ggcggcccccagggctacatgcagacacccatgtacggctaccccccgatgggcccttac
ggcaaccccatgatgcccgttcgtggtgtggtcggcggctaccccggtgctcctcccatg
atgggtgctcgtcccggtgctcgctacccatctggccagcctggtgccccagtccccatg
ggctacatgccgcccaacgcccagggcgcctaccccggcatgcctcccaactaccccgtc
cgccccgcaggcaacgctcgtcctcccaccgctcctgctgccgcccggcccggctcgtcg
cctgtcggcgcccagcagggccttccccgtggccaggtccccgcggctcgtcctcaggca
gagggtgccgctccccagccccgcctgaacgcccaggctcttgcccgtgcttcgcccatt
gagcagaagcagatgctcggcgaggctatctaccccctcattcacgactcgcagcccgag
ctcgccggcaagatcaccggcatgcttctcgagatggacaacgccgagctgctgcacctc
gtcgagtctcccgctgcccttactgagaaggtcgacgaggcgctccgggtcctcgaggac
tggggcaaggacggcaaggagggtgacgttgagggtgaggttgaggagaaggaggttgag
gccgagggcgagaagggcgacgaggagaagaaggagtaa
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