Cutaneotrichosporon cavernicola: CcaHIS019_0109240
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Entry
CcaHIS019_0109240 CDS
T09540
Symbol
SUB2, CcaverHIS019_0109240
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03013
Nucleocytoplasmic transport
ccac03015
mRNA surveillance pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0109240 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
CcaHIS019_0109240 (SUB2)
03015 mRNA surveillance pathway
CcaHIS019_0109240 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0109240 (SUB2)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0109240 (SUB2)
Enzymes [BR:
ccac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CcaHIS019_0109240 (SUB2)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CcaHIS019_0109240 (SUB2)
Spliceosome [BR:
ccac03041
]
Complex C
Other components
EJC/TREX
CcaHIS019_0109240 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CcaHIS019_0109240 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
Ned1_M
Motif
Other DBs
NCBI-GeneID:
85492077
NCBI-ProteinID:
XP_060453472
UniProt:
A0AA48KZ33
LinkDB
All DBs
Position
1:join(2465094..2465245,2465310..2465377,2465425..2465533,2465582..2465883,2466607..2466725,2466760..2467001,2467047..2467350)
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AA seq
431 aa
AA seq
DB search
MAPEDTEELVDYDEAEDTYVAPATGTAADGAELADGEKKGSYVGIHSTGFRDFLLKPEIL
RAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLASLQQIEPVDGEVSII
VMCHTRELAYQIRNEFTRFSKYMTNVRTGVVYGGTPISADIELLSNKEKCPHIIVGTPGR
MMALVRDKKLNASKVKHFVLDECDKMLDQLDMRRDVQEVFKATPHHKQVMMFSATLSKEI
RATCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEREKNRKLNDLLDSLEFNQVCIFVK
SVARATQLDALLQQCNFPSICIHSALKQEDRISRFQQFKAFEKRILVATDIFGRGIDVER
VNVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSADDEEVLKKIQERFTVAIPTMP
DSIDPATYMTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgaggacactgaagagcttgtcgactacgacgaggccgaggacacctatgtc
gccccggctaccggtaccgctgctgatggtgccgagttggccgatggcgagaagaagggc
agctatgtcggcattcactcgacgggcttccgtgacttccttctcaagcctgagatcctc
cgcgccatctcggaccttggtttcgagcacccctcggaggtccagcaggagtgcattccc
caggccatcctgggtaccgacgtcctttgccaggccaagtcgggtatgggcaagaccgcc
gtcttcgttcttgcgtctctccagcagattgagcccgtcgacggcgaggtctcgattatt
gtcatgtgccacactcgtgaactggcataccagatccgcaacgagttcacgcgcttctcc
aagtacatgaccaacgtgcgcactggcgtcgtctacggcggcactcccatctcggccgac
attgaacttctctccaacaaggagaagtgccctcacatcattgtcggcacccctggccgc
atgatggccctcgttcgcgacaagaagctcaacgcgtccaaggtgaagcactttgttctc
gacgagtgcgacaagatgcttgatcaactcgacatgcgccgcgacgtccaggaggtcttc
aaagctacgccccaccacaagcaggttatgatgttctcggccaccctctcgaaggagatc
cgcgcgacctgcaagaagttcatgcagagccctctggagatctacgtcgacgatgagacc
aaattgacgctgcacggtcttcagcagtacttcctcaagctcgaggagcgcgagaagaac
cgcaagctcaacgaccttctcgactcgctcgagttcaaccaggtgtgcatcttcgtcaag
tcggttgcgcgtgcgacccagctcgacgctcttctgcagcagtgcaacttcccatccatc
tgcatccactcggccctcaagcaggaggaccgtatctcgcgcttccagcagttcaaggcg
tttgagaagcgtatcctcgtcgcgaccgacattttcggccgtggtatcgacgtcgagcgt
gtcaatgttgtcatcaactatgacgcgccggccgatgccgactcgtacctccaccgtgtc
ggtcgtgcgggtcgtttcggcaccaagggtctcgccatctcgtttgtctcgtctgcggat
gacgaggaggtgctcaagaagatccaggagcgcttcacggtcgctatcccgaccatgccc
gactcgatcgaccccgccacctacatgacgtcgtaa
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