KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0110510
Entry
CcaHIS019_0110510 CDS       T09540                                 
Symbol
lsm8, CcaverHIS019_0110510
Name
(RefSeq) uncharacterized protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03018  RNA degradation
ccac03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CcaHIS019_0110510 (lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CcaHIS019_0110510 (lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccac03019]
    CcaHIS019_0110510 (lsm8)
   03041 Spliceosome [BR:ccac03041]
    CcaHIS019_0110510 (lsm8)
Messenger RNA biogenesis [BR:ccac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CcaHIS019_0110510 (lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CcaHIS019_0110510 (lsm8)
Spliceosome [BR:ccac03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CcaHIS019_0110510 (lsm8)
SSDB
Motif
Pfam: LSM Nanovirus_C8
Other DBs
NCBI-GeneID: 85492204
NCBI-ProteinID: XP_060453599
UniProt: A0AA48IEB4
LinkDB
Position
1:join(2815148..2815175,2815230..2815270,2815742..2815869,2816027..2816117)
AA seq 95 aa
MSALDGFRDQLVQVVLFDGRVIVGKLKGNDNHSNIILSDSVEREYAPDRGVEMVPLGLYM
IKGDNIVFVGEVDEDKDSSLDYSEIKAEPLREVQF
NT seq 288 nt   +upstreamnt  +downstreamnt
atgtcggccctcgacggcttccgtgaccaactcgttcaggtcgtcctcttcgacgggcgc
gttattgtcggcaagctcaagggcaacgacaaccacagcaacatcatcctctcggacagt
gttgagcgcgagtatgcaccggaccgtggcgtcgagatggtccccctcggcctctacatg
atcaagggagataacatcgtgttcgtcggcgaagtagacgaagacaaggatagcagcctc
gattactcggagatcaaggctgagccgttgcgcgaggtgcaattttag

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