Cutaneotrichosporon cavernicola: CcaHIS019_0111700
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Entry
CcaHIS019_0111700 CDS
T09540
Symbol
MTR4, CcaverHIS019_0111700
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0111700 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0111700 (MTR4)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0111700 (MTR4)
03009 Ribosome biogenesis [BR:
ccac03009
]
CcaHIS019_0111700 (MTR4)
03016 Transfer RNA biogenesis [BR:
ccac03016
]
CcaHIS019_0111700 (MTR4)
Enzymes [BR:
ccac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CcaHIS019_0111700 (MTR4)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CcaHIS019_0111700 (MTR4)
Spliceosome [BR:
ccac03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CcaHIS019_0111700 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
CcaHIS019_0111700 (MTR4)
Ribosome biogenesis [BR:
ccac03009
]
Eukaryotic type
Pre-60S particles
Helicases
CcaHIS019_0111700 (MTR4)
Transfer RNA biogenesis [BR:
ccac03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CcaHIS019_0111700 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
85492323
NCBI-ProteinID:
XP_060453718
UniProt:
A0AA48I319
LinkDB
All DBs
Position
1:join(3147105..3147771,3147809..3148683,3148721..3150004,3150048..3150431)
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AA seq
1069 aa
AA seq
DB search
MAGTPGPSKKQRKRGADSKPSKSKPAKQPRLDADDDPSDVDMPTGPPSRDPMRALDEAEH
AGEGVHDGPVIEADGIVPGVAPVRADEFSTEAEREVAGGAGLAGDEADMKIVHSVRHQVA
LPPGYPYVPISDHKRFDPPAKTYPFELDPFQYVATSCIERSESVLVSAHTSAGKTVVAEF
AIATCLKEGKRIVYTSPIKALSNQKFREFQEEFGEENIGLMTGDVTINPSASCLVMTTEI
LRSMLYRGSEVVRELAWVVFDEVHYMRDKDRGVVWEETLILLSHTVRCVFLSATIPNSME
FAEWWCQTHEQPCHIVYTDFRPTPLQHYLFPTGSEGIYLVVDEKSNFREDNFQKAMAALA
ANKGEDSADPNAGAGRKGNKTRKGAMKGGTSDIYKIVKLVMNKNLNPVIVFAFSKRECEA
HAMQMSKIDMNTEDEAKTVEQVFENAIAVLSDDDKKLPQIEHLLPLLKRGIGIHHGGLLP
IMKEVIEILFQEGLLKCLFATETFSIGLNMPAKTVVFTDVQKFDGKNFRNLSGGEYIQMS
GRAGRRGLDTRGIVIMMVNEKLEPEAAKGMVKGQADRLDSAFSLGYNMVLNLMRVEGISP
EYMLERSFHQFQNSLSIPALEAQLAAAEKERDAITVDREDDVEEYYELRESLKMFEGDFK
AVINHPDYALPFMQPGRLVEIKDGDRDFGWCVVVAYHKLENSKRGRPVVGPNDPPQKHYV
LDVLCRVEPGTEIGKPNSDTARAARPDARGDVAIIAVTLDAVQSIAHIRLKMPTDLRQRQ
QKEQAYKLVDEVKRRFKGAITLLDPVANQGIKDEGFRKLVRKIKVLEDRVASLPIANDPA
LPALFDTYDRKATLNTKVRELKKRIGSVQDVLQLEELKARKRVLRRLGFVDGEVATVKGR
VACELSTGDELLLTELMFGGTFNDLAPEALTALLSCFVFDEKSEAKTQLNAEIAAPLRTL
QETARRIAQVSVESKLPLVEDEYVQSFKVEMAPLVYAWCKGSPFSEIVKMTDIFEGSIIR
SLRRLLELLRQLVNAANVIGNADLEAKFTKCIEITERTNSVVFNPSLYL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggccggaacaccagggccaagcaaaaaacaacgcaagcgcggcgcagactccaagcca
tccaaatctaagcctgcaaagcagccgcgcttagacgcagacgacgacccgagcgatgtc
gacatgccaaccggtccacctagtcgcgatcctatgcgcgcgctcgatgaggccgagcac
gccggagaaggcgtccatgacggtccggtcatcgaggccgatggaatagtgcctggcgtt
gcgccggtccgcgcagacgagttcagcaccgaggccgagcgcgaggtcgctggaggcgct
gggctcgcaggcgacgaggcggacatgaagatcgtccactctgtgcgccaccaggttgca
cttcccccaggatacccctacgttcccatttcggatcacaagcgcttcgatcctcccgca
aaaacatacccgttcgagcttgaccctttccagtacgttgcgacgagctgtatcgagcgc
tcggaaagtgtgctcgtttccgcacatacttcggctggaaagacagtagtcgcagagttc
gcaatcgccacatgcttgaaagaaggaaagcgtatcgtttacacgtcacctatcaaggcg
ctgtcgaaccaaaagttccgcgagttccaggaggagtttggggaggagaacattgggttg
atgactggcgatgtgacaatcaatccctcagcgtcgtgccttgtcatgactacggagatt
ctgcgctcgatgctgtaccgtggctcagaggttgtgcgcgagctcgcgtgggtcgtattc
gacgaggtgcactacatgcgcgacaaggaccgcggcgttgtgtgggaggagacgctgatc
ctgctctcgcacactgtgcgctgcgtgtttctctccgcaaccatccctaactcgatggag
tttgccgagtggtggtgccagacacacgagcagccatgtcacattgtgtacaccgacttc
cgaccgacgccgctgcagcactacctgttccctacgggaagtgagggcatctatctcgtt
gtggacgaaaagtccaacttccgcgaggacaacttccagaaggcgatggcggcgctggca
gccaacaagggcgaggacagcgcggacccgaatgccggcgcagggcgcaaggggaacaag
acgcgcaagggcgcgatgaagggcggcacgagcgacatctacaagattgtcaaactggtc
atgaacaaaaacctcaacccagtgatcgtgttcgcgttcagcaagcgcgagtgcgaggcc
cacgccatgcagatgagcaagatcgacatgaataccgaggacgaggccaagacggtcgag
caggtgtttgagaacgccattgccgtgttgagcgacgacgacaagaagcttccccagatc
gaacacctcctcccgttgctcaagcgcggtattggaatccaccacggcggcctcctcccg
atcatgaaggaggtcatcgagattctcttccaggagggcttactcaagtgtctcttcgcc
actgagacgttctctatcggtctcaacatgcctgccaagactgtcgtcttcacggacgtg
caaaagttcgacggcaagaacttccgcaacctctctggcggcgagtacattcagatgtcg
gggcgtgccggtcgtcgtggtctggacacgcgcggtatcgtcatcatgatggtcaacgaa
aagctcgagccggaggctgccaagggcatggtcaagggacaggcggaccgcctcgactcg
gccttctctttggggtacaacatggtgctgaacctaatgcgcgttgaaggcatcagcccc
gagtacatgctcgagcgatcgttccaccagttccagaactcgctaagcattcctgctctc
gaggcacagctggcggcagcggagaaggagcgcgacgcgatcaccgtcgaccgcgaagat
gatgtggaggaatattatgaactccgcgagagcctcaaaatgtttgagggcgacttcaag
gcggtcatcaaccaccccgactacgcgctgccatttatgcagccgggtcggctggtggag
atcaaggacggcgaccgagactttggctggtgtgtggtggtggcataccacaagctcgag
aacagcaagcgcggacggccagttgtcgggcccaacgatcccccacagaagcactacgtg
ctcgacgtgctgtgtcgcgtcgaacctggcaccgagattggcaagcccaactcggacacg
gcgcgcgccgcgcgccccgatgctcgcggcgacgttgcgatcattgcagtgacactggac
gctgtgcagagcatcgcacacatccgactcaagatgccgaccgacctccgccagcgccag
cagaaggagcaggcgtacaagctcgtcgacgaggtcaagcgtcgtttcaagggcgcgatc
actctgcttgacccggtcgctaaccagggtatcaaggatgagggcttccgcaagctcgtg
cgcaagatcaaggtactcgaggaccgcgtcgcctcgttgcccatcgccaatgaccccgcc
ctccccgccctcttcgacacatatgaccgcaaggccaccctcaacaccaaggtgcgcgag
ctcaagaaacgcatcgggagcgtgcaagatgtcctgcagctcgaagaactcaaggcgcgc
aaacgtgtcttgcgccggctgggctttgttgacggcgaagtcgcgactgtcaagggccgt
gtggcatgcgagcttagcacgggcgacgagctgctcctcaccgaactcatgtttggaggc
acattcaacgaccttgcgcccgaagcgctgacggccttgttgagctgttttgtgtttgac
gaaaagtccgaagcaaagactcagctcaatgccgagatcgcagctcctctgcggacgttg
caagaaacggcacggcggatcgcccaggtctcggtagagagcaaactccccctcgtcgag
gacgagtacgtccagagcttcaaggtcgagatggcgccgctcgtgtatgcgtggtgcaag
ggttcgccgttttccgagattgtcaagatgacggatattttcgaagggtccatcatccgc
tcgttacgccgtttgctcgagttgctgcgccagctcgtgaacgccgcaaacgttattggg
aatgccgacctcgaggcaaagttcacaaagtgcatcgagattacagagcgcacaaactcg
gtcgtattcaacccctcgctgtacctctaa
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