Cutaneotrichosporon cavernicola: CcaHIS019_0203190
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Entry
CcaHIS019_0203190 CDS
T09540
Symbol
RSE1, CcaverHIS019_0203190
Name
(RefSeq) uncharacterized protein
KO
K12830
splicing factor 3B subunit 3
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0203190 (RSE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0203190 (RSE1)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0203190 (RSE1)
03036 Chromosome and associated proteins [BR:
ccac03036
]
CcaHIS019_0203190 (RSE1)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
CcaHIS019_0203190 (RSE1)
Spliceosome [BR:
ccac03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
CcaHIS019_0203190 (RSE1)
Complex B
CcaHIS019_0203190 (RSE1)
Complex C
U2 SnRNP specific factors
CcaHIS019_0203190 (RSE1)
Chromosome and associated proteins [BR:
ccac03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
CcaHIS019_0203190 (RSE1)
TFTC complex
CcaHIS019_0203190 (RSE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
85492828
NCBI-ProteinID:
XP_060454223
UniProt:
A0AA48L1H9
LinkDB
All DBs
Position
2:join(819364..819511,819556..822712,822970..823099,823275..823490)
Genome browser
AA seq
1216 aa
AA seq
DB search
MHLLNLTLQPASAAMLAIVGSFSGKGQEIIVVRGSTRLEVLKLNPATGVLDSICSSEAFG
TIRDLSAVRLAGMTKDYIVLSSDSGRLSIIELVIQPTPHFESLYQEVYGKSGSRRTIPGQ
FLAADPKGRAIMYGAVEKAKLVYILNRNAEGKLFPGSPLEAHKAHTIVTSLVSLDTGYDN
PMFAALEIDYAEADQDPTGDAMRRTEKHLTFYELDLGLNHVVRKWSEPCDRRANLLVQVP
GGQNANTDRFDGPSGVLVCAEDHISWQHMDAEAHRVPIPRRRNPLAQRGESSRGLMIVSA
ITHKIRGAFFFLLQSEDGDLYKVVIEHEGEDVKALRIKYFDTVPVATSLCILKSGYLFVA
SEFGDQNLYQFQSLADDDEEQEWSSTDYRDNGVGEGPLPYAFFNPRPLTNLLLVDTQTSL
DPILDAQVVNLLGGASDTPQIYAACGRGPRSTFRSLKHGLDVNVLVSSGLPGVPNAVWTL
KLSEEDEYDSYIVLSFPNGTLVLSIGETIEEVNNTGFLSSGPTLAVQQLGPNGLLQVHPY
GLRHIRAADRVDEWPCPSGTTIVSATTNTRQVVIALSTAELVYFELDDEGSLSEYQEKKS
LPGNATCVSIADVPEGRKRTAFLAVGCDNQTVHVISLEPDNTLETLSLQALTAPPSDICL
AEIFDTSIDKNRATTFMTIGLVNGVLLRTVVDPVDGSLSDTRLRFIGAKPPRIVRSNVQG
SPCVMAFSSRTWLLYTFQDLLQTQPLIYDSLEYACHLSAAMCPDGLIGISGNTLRIFTIP
RLGTKLKQDSMPLSYTPRHFVSYPYAPVFYGIEADHRTYGPKTIERVVAAKEAAGDHVNK
EVLELPFAEFGRPRAGPGHWASCIRVMDPLAVSTLQTIELDEDEAAFSLAVCYFERMGGR
PSLVVGTGVRTTLVPKSCAEGWLRVYSIEDDGKRLEFMHKTKTDELPLAVAAFQGFLLAG
IGKSLRLYEMGKKALLRKCENNGFPTGIVSIHVLGSRIIVGDAQESAFFCVYRTIPTRQL
LIFADDSQPRWLTAICSVDYDTVCAADKFGNIFVNRLEERVSEKVDDDPTGAGILHEKGF
LMGAAHKTDMIAHYNVGSIVTSLTKVSVAPGGRDVIVYTTISGAVGALVPFVSNDDVEFM
TTLEMHIRSLNTSLVGRDHLAYRGYYAPVKAVVDGDLCDSFNLLPYPQQQAIAADLDRNV
GEVLKKLEQLRTSSVF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcctcaacctcacgctccagccagcgtctgcggcgatgctcgccatcgtcggc
agcttcagcggcaagggccaggagattatcgttgtgcgaggctcgacgcgcctcgaggtc
ctcaagctcaaccccgcgactggcgttttggactcgatctgcagctccgaggcctttggt
actatccgcgacctctctgcggtccgcctcgccggtatgacgaaggattacattgtgctg
tcatccgactcgggccggttgtccattatcgagcttgtcatccaacctaccccacacttc
gagagcctgtaccaggaggtgtatggcaagtctggaagccggcgaaccatcccgggacag
ttcctagcggcagatcctaaaggccgcgcgatcatgtacggcgcggtggagaaggccaag
ctcgtgtacattctgaaccggaacgccgagggcaagctgtttcctggctcgccactcgag
gcacacaaggcgcacacgatcgtcacgtcgctcgtgtcgctcgacacggggtacgacaac
ccgatgtttgcagcactcgaaatcgactatgccgaagcggaccaggacccgacgggcgat
gcgatgcggcggacagagaaacacttgacattctacgagctcgacctcggcctcaaccac
gttgtgcgcaagtggagtgaaccatgtgaccgccgcgccaacctccttgtccaggtgccc
ggtggacagaatgccaacacggacagattcgatgggccatcaggcgtcctcgtgtgtgct
gaggaccacatctcgtggcagcacatggacgccgaggcgcaccgcgtccccatcccgcgg
aggaggaatccgctcgcacagcgcggcgagagcagccgtggcctcatgatcgtgagcgcc
attactcacaagatccgcggcgcgttcttcttcctcctccagagcgaggatggcgacctg
tacaaggttgtgatcgagcacgagggcgaggatgttaaggcgctccgcatcaaatacttt
gacacagtgcctgtcgcaacgagcttgtgcatcctcaagtcgggatacttgttcgtcgcg
agcgagttcggcgaccagaacctgtaccagttccagagcctggcagacgacgacgaggag
caggagtggtcctcgaccgactaccgggacaatggtgtcggcgaggggcccttaccgtac
gcgttcttcaatccacgaccattgaccaacctgctcttggtcgacacgcagacgtcgctg
gaccctatcctcgacgcgcaggttgtcaacctcttgggcggcgcgagcgacactccccag
atttacgcggcgtgcgggcgtgggccgcgcagcaccttccgctccctcaagcatggattg
gacgtcaacgtcctcgtgtcgtcagggctaccaggtgtgccgaacgcagtgtggactctc
aagctatccgaggaggacgagtacgattcatacatcgtgctctcgttccctaacggcaca
ttagtgttgtcaattggcgagacgatcgaggaggttaacaacacagggttcttgagctcc
ggcccgactctcgctgtccagcagctcggcccgaatggcctgctccaggtccacccatac
ggactgcgccacatccgcgccgcggaccgcgtggacgagtggccatgcccgtccggcacg
actattgtttcggcgacgacaaacacgcgtcaggtcgttatcgcgctcagcacagccgag
ctcgtctactttgagctagacgacgaagggtccctcagcgagtatcaggagaagaagagc
ctgcctggcaacgcgacttgcgtgtccatcgccgatgtccctgagggtcgcaagcgcacc
gccttcctcgctgtcgggtgtgacaaccagactgtgcacgtcatctcgcttgagcctgac
aacacgctcgagacactgtcgctgcaggccttgacagcacctccaagtgacatctgcctc
gccgagatcttcgacacatcgatcgacaagaaccgcgcgaccacgttcatgacgatcggt
ctcgtcaacggagtgctgctccgcacggttgtcgaccccgtcgatggctcgctgtctgac
acgcgactccgctttatcggcgccaagccgccacgtatcgtccgctcgaacgtgcagggc
agcccgtgtgtcatggcgttttcgtcgcgcacatggcttctgtacaccttccaggacttg
ctccagacccagcccctcatctacgactcgcttgagtacgcgtgtcatctcagcgccgca
atgtgccccgacggcctgatcggcatctcgggcaacactcttcgcatcttcacaatccct
cgcctgggcacgaagctcaagcaggactcgatgccgctctcgtacacgccccgccatttc
gtgtcgtacccctacgcacctgtgttctacggcatcgaagcagaccaccggacatatggc
ccgaagacgatcgagcgcgtcgtggccgccaaggaggcggcaggagaccatgtgaacaag
gaggtgctggagctgccgttcgccgagttcggccgcccgcgtgctggtccaggccactgg
gcatcgtgcatccgcgtgatggacccgttggccgtgtcgacactgcagacgatcgagttg
gacgaggacgaggcggcgttctcgctcgccgtctgctactttgagcgcatgggagggaga
ccgtcgctcgtcgtcggtacgggcgtgcgcacgacccttgtcccgaagagctgtgctgag
ggctggttgagagtttactcgatcgaagacgacggcaagcgcctcgagttcatgcacaag
acgaagacggacgaacttcctcttgcggtcgccgcgttccagggctttttgctcgcgggc
attggcaagagcctgcgtctgtacgagatgggcaagaaggcgctgctgcgcaaatgcgaa
aacaacggtttcccaaccggcatcgtaagcattcacgtgctcggctcgcgtatcattgtc
ggcgacgcacaagaatcggcctttttctgtgtgtaccgcacgattcccacgcgccagctc
cttatctttgcggatgacagccagccacgctggctcacggccatctgtagcgtcgactat
gacacggtgtgcgccgccgacaagtttggcaacatctttgtgaaccgcctcgaggaacgg
gtgtccgaaaaggtcgacgatgacccaacaggcgcggggattctgcacgagaagggcttc
ctcatgggcgcagctcacaagacggatatgattgcgcactacaacgtcgggtcgattgtc
accagcctaaccaaggtctcggtggcgcctggtggcagggatgttatcgtgtacactaca
atctcgggtgcggtcggcgcactggttccgtttgtctcgaacgacgacgtcgagttcatg
acgacactggagatgcacatccgctcgctcaacacgtctcttgtcgggcgtgaccacctc
gcataccgcgggtactatgcgcccgtcaaggccgtggtcgacggcgacctgtgtgacagc
ttcaacctcctcccctacccccagcagcaggcgattgcggccgacttggataggaacgtg
ggcgaggtgttgaagaagctcgagcagctgaggacaagcagtgtgttctag
DBGET
integrated database retrieval system
