KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0205710
Entry
CcaHIS019_0205710 CDS       T09540                                 
Symbol
lsm7, CcaverHIS019_0205710
Name
(RefSeq) uncharacterized protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03018  RNA degradation
ccac03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CcaHIS019_0205710 (lsm7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CcaHIS019_0205710 (lsm7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccac03019]
    CcaHIS019_0205710 (lsm7)
   03041 Spliceosome [BR:ccac03041]
    CcaHIS019_0205710 (lsm7)
Messenger RNA biogenesis [BR:ccac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CcaHIS019_0205710 (lsm7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CcaHIS019_0205710 (lsm7)
Spliceosome [BR:ccac03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CcaHIS019_0205710 (lsm7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 85493080
NCBI-ProteinID: XP_060454475
UniProt: A0AA48KYB3
LinkDB
Position
2:complement(join(1462586..1462608,1462642..1462728,1462763..1462834,1463020..1463149,1463204..1463215))
AA seq 107 aa
MSSRGRGGYRGRGGGQRPDERKKREAILNLALYVDKSIRVTLLGGRAVTGTLKGYDQLMN
LVMDDVVEHYENNEMPERTLGLVVLRGPNVVLVSPTDGLAEIENPFA
NT seq 324 nt   +upstreamnt  +downstreamnt
atgtcatcaaggggacgaggaggatatcgcgggcgtggtggtggccagcgtcctgacgag
cgtaagaagcgcgaggcgatcctcaacctcgcgctttatgtcgacaagagtatccgggtt
acgctgctgggtgggcgggctgtcaccggcacgctcaagggatacgaccagttgatgaac
ctcgtgatggacgacgttgtcgagcactacgagaacaacgagatgccggagcgcaccctc
ggcctcgtcgtgctccgcggccccaacgtcgttctcgtctccccgaccgacgggctggcc
gaaatcgagaaccccttcgcgtag

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