KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0301880
Entry
CcaHIS019_0301880 CDS       T09540                                 
Symbol
CcaverHIS019_0301880
Name
(RefSeq) uncharacterized protein
  KO
K07573  exosome complex component CSL4
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CcaHIS019_0301880 (CcaverHIS019_0301880)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccac03019]
    CcaHIS019_0301880 (CcaverHIS019_0301880)
Messenger RNA biogenesis [BR:ccac03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CcaHIS019_0301880 (CcaverHIS019_0301880)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     CcaHIS019_0301880 (CcaverHIS019_0301880)
SSDB
Motif
Pfam: EXOSC1 RRP4_S1 ECR1_N
Other DBs
NCBI-GeneID: 85493989
NCBI-ProteinID: XP_060455384
UniProt: A0AA48IGI7
LinkDB
Position
3:complement(join(492861..492955,492987..493138,493172..493284,493318..493386,493448..493588))
AA seq 189 aa
MSQILLPGQPLPAAFNTTPLPQCGVGCYESDGRILASVIGRPVRDGSIVSVAGKQDAGAV
PDIGAIVMGPVSRLSPTQASITIQIVNDRPVAESTEEITGVVRVSDIRLTERDKVRMGEC
FRLGDIVKAKVISLGDARSYYLSTAANELGVVYAVSEDGNPLLSISYQEMEDPGTGRTEK
RKVAKPEDV
NT seq 570 nt   +upstreamnt  +downstreamnt
atgtcccaaatacttctccccggccagcccctcccagctgccttcaacaccacacccctt
cctcagtgtggtgtggggtgctatgagagcgatgggcgcatcctcgcttccgttatcggg
cggccagtgcgcgatggctcgatcgttagcgtcgcggggaaacaagacgccggcgcggtg
cctgacatcggcgcgatcgtcatgggcccggtctcgcgcctctcgccgacacaagcgagc
atcactatccagattgtcaatgaccgccccgtcgctgagtcgacagaggagatcactggg
gtcgtgcgcgtttcggatatccgcctgacggagcgcgacaaggtgcgcatgggcgagtgt
ttccgcctcggcgacatcgtcaaggccaaagtcatttcgctcggcgacgcgaggagctat
tatctctccaccgcggcaaacgagctcggcgtggtatacgccgtctctgaagatggtaac
cccctcctgtccatctcgtaccaggagatggaggaccctgggactggccgcacagagaag
cgcaaggtcgccaagccagaggatgtgtag

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