Cutaneotrichosporon cavernicola: CcaHIS019_0301880
Help
Entry
CcaHIS019_0301880 CDS
T09540
Symbol
CcaverHIS019_0301880
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0301880 (CcaverHIS019_0301880)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0301880 (CcaverHIS019_0301880)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CcaHIS019_0301880 (CcaverHIS019_0301880)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CcaHIS019_0301880 (CcaverHIS019_0301880)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
RRP4_S1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
85493989
NCBI-ProteinID:
XP_060455384
UniProt:
A0AA48IGI7
LinkDB
All DBs
Position
3:complement(join(492861..492955,492987..493138,493172..493284,493318..493386,493448..493588))
Genome browser
AA seq
189 aa
AA seq
DB search
MSQILLPGQPLPAAFNTTPLPQCGVGCYESDGRILASVIGRPVRDGSIVSVAGKQDAGAV
PDIGAIVMGPVSRLSPTQASITIQIVNDRPVAESTEEITGVVRVSDIRLTERDKVRMGEC
FRLGDIVKAKVISLGDARSYYLSTAANELGVVYAVSEDGNPLLSISYQEMEDPGTGRTEK
RKVAKPEDV
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaatacttctccccggccagcccctcccagctgccttcaacaccacacccctt
cctcagtgtggtgtggggtgctatgagagcgatgggcgcatcctcgcttccgttatcggg
cggccagtgcgcgatggctcgatcgttagcgtcgcggggaaacaagacgccggcgcggtg
cctgacatcggcgcgatcgtcatgggcccggtctcgcgcctctcgccgacacaagcgagc
atcactatccagattgtcaatgaccgccccgtcgctgagtcgacagaggagatcactggg
gtcgtgcgcgtttcggatatccgcctgacggagcgcgacaaggtgcgcatgggcgagtgt
ttccgcctcggcgacatcgtcaaggccaaagtcatttcgctcggcgacgcgaggagctat
tatctctccaccgcggcaaacgagctcggcgtggtatacgccgtctctgaagatggtaac
cccctcctgtccatctcgtaccaggagatggaggaccctgggactggccgcacagagaag
cgcaaggtcgccaagccagaggatgtgtag
DBGET
integrated database retrieval system