Cutaneotrichosporon cavernicola: CcaHIS019_0306320
Help
Entry
CcaHIS019_0306320 CDS
T09540
Symbol
PRP40, CcaverHIS019_0306320
Name
(RefSeq) uncharacterized protein
KO
K12821
pre-mRNA-processing factor 40
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0306320 (PRP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0306320 (PRP40)
Spliceosome [BR:
ccac03041
]
Complex A
U1 snRNP components
U1 related factors
CcaHIS019_0306320 (PRP40)
Complex B
CcaHIS019_0306320 (PRP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF1398
Motif
Other DBs
NCBI-GeneID:
85494432
NCBI-ProteinID:
XP_060455827
UniProt:
A0AA48L2C7
LinkDB
All DBs
Position
3:join(1677573..1677611,1677644..1677826,1677982..1678082,1678117..1679767)
Genome browser
AA seq
657 aa
AA seq
DB search
MSASPAPEAASQWKEYKNAEGRVYWSHGVTKQSVWEKPDELRTPFERAMGKTPWKQYASG
GKPYYVNSLTKETVWNLPQDLVKLKEEVEALELAKREREHRKATGQASPTPPPDSDSDDG
GALTHYRGRVAPTRTPEPEDEPITIPHGGFKNIPDAEEAFMYLLKREGIDETWTWDAAMR
KVVLDPLFKALETLALKQTAFEKWQAQLVAEKAAARDARIAELRPKLRRLFAQGGIKSYH
TVKTADKLFAGDKYWRRAKEERRLLLDEYTSELANHDAAAKKQRKEHCISALTKLIRTLD
ITVATRWHDAREIIARSDAFAADPLLGKMEPLDMLTVYDEYARALEREFDEESRRLRAEA
RRRARKARDGFRALLRELRDAGKLTRTSKWKETLPLLREEERYTCLLGVPGSTPLELWMD
AVDDMQLAAEERASKIENALTAKIELETTFEAFDKLCADSGVTASEEAKREALEVIHARL
AKAAAEEARRAERRRRHRIDDLRDALRHIRGLDAESTYDAALPLISDLAEFKVLEDDDRR
TAFEKHTRRLRDKARTDSRDRRMSIDSDRDRDRDRRRELWDKDRDRDRDWRDRRDRDRER
DRDRERERERDRERDRREHDRQRERRRDRSEDDRERETKRRRVSPASSRADKEEGEI
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcctcgcccgcccccgaggccgcttcacaatggaaagagtacaagaacgccgag
gggcgcgtgtactggtcgcatggggtgaccaagcagtcggtttgggagaagccggatgaa
ctgcgcacgccgttcgagcgcgcaatgggcaaaactccatggaagcagtatgcgagcggc
ggcaaaccgtactatgtcaactcgctcactaaggagactgtgtggaacctcccacaggac
ctggtcaagttgaaggaggaggttgaggcgctggaacttgccaagcgcgagcgcgaacac
cgcaaagctacaggccaagcttcacccacccccccgcccgatagcgatagcgacgacggc
ggcgcgttgacgcattaccgcggtcgcgtcgcacccacacgtacccccgaacccgaggat
gaaccgatcaccatcccccacggagggttcaagaacatccccgatgcggaagaggctttc
atgtacctcctcaaacgggagggtatcgatgagacgtggacgtgggacgcggctatgcgt
aaagtcgtcctggacccgctcttcaaagccctcgagacgcttgcactgaaacaaacggcc
tttgagaaatggcaagcccagctggtggccgagaaggcggctgcgcgggacgctcgtatc
gccgagttgaggcccaagctgcgccgcctatttgcacagggcgggatcaagagctaccat
actgtcaagacggcggacaagttgttcgccggcgacaagtattggcgccgggctaaggag
gagcgtcggctcttgttggacgagtatacgtccgagttggccaaccatgacgccgcagcc
aagaagcagcggaaggagcactgcatctcggcgctgacgaagcttatccggacgctggat
attactgttgcgacgcggtggcacgatgcgcgggagattatcgcgcgcagcgacgcgttc
gctgccgatcccctgctcggcaagatggagccactggacatgctcactgtatatgacgag
tatgcgcgtgctcttgagcgcgaatttgacgaggagagccggcgtctgcgtgctgaggcg
cgccggcgtgccaggaaggcccgagatggatttagggctcttctccgcgaactccgtgac
gcgggcaaactcacccgcacgagcaagtggaaggagacgctgcccctcctccgcgaggag
gagcgatacacttgcctcctcggagtgccgggaagcactccactcgagttgtggatggac
gccgtggacgacatgcagctcgcggccgaggagcgcgcatccaagatcgagaatgcgctc
accgccaagatcgagctcgagaccacctttgaggcctttgacaagctttgcgccgactct
ggcgtcaccgctagtgaggaggcgaagcgcgaggcgctggaagtgatccacgcgcgacta
gccaaggccgcggcggaagaggctcgtcgtgctgagcggaggcggcggcaccgcatcgat
gacctgcgcgacgccctgcgccacatacgcggcctcgacgctgagagcacgtacgacgcc
gcgcttccgctcatctccgacctggctgaattcaaggtcttggaggacgacgaccggcgg
actgcatttgaaaaacatacccgccgactgagggacaaggcgcgcaccgactcgcgcgac
cgacggatgagtatcgattccgaccgggatcgggatcgggacaggcgccgcgagctgtgg
gacaaggaccgtgatagggacagggattggcgtgatcgccgcgaccgggatcgcgagagg
gatcgtgacagggagagagagagggagagggatcgcgagagggataggcgcgagcacgac
cggcagagggagcggagacgcgatcggagcgaggacgaccgtgagcgcgagactaagcgt
cgtcgtgtgtcgcctgcgtcgtcgcgggccgacaaggaggagggcgagatatag
DBGET
integrated database retrieval system
