Cutaneotrichosporon cavernicola: CcaHIS019_0308190
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Entry
CcaHIS019_0308190 CDS
T09540
Symbol
TFB1, CcaverHIS019_0308190
Name
(RefSeq) uncharacterized protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03022
Basal transcription factors
ccac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CcaHIS019_0308190 (TFB1)
09124 Replication and repair
03420 Nucleotide excision repair
CcaHIS019_0308190 (TFB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0308190 (TFB1)
03400 DNA repair and recombination proteins [BR:
ccac03400
]
CcaHIS019_0308190 (TFB1)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CcaHIS019_0308190 (TFB1)
DNA repair and recombination proteins [BR:
ccac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CcaHIS019_0308190 (TFB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
85494619
NCBI-ProteinID:
XP_060456014
LinkDB
All DBs
Position
3:complement(join(2187784..2188103,2188136..2188708,2188794..2189642,2189679..2189856))
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AA seq
639 aa
AA seq
DB search
MLVIHPSTIILPMSSDTLKFEVSFKKVTGSLSVTQTLIAWNPAVAGTMDRQQQALNRVTN
MLASKAGSARTSLKLVFQDDVPVGGLLFTFTGPTKDADRQAVQDRLIPFVSAHRTPAAST
PVPNPALAAVASGSNPASTPGSPAPGTPGTPVSIARKRKAEDISPADAEARRRMNKVRER
VLRSNPTLQALHRELVQARQITEEEFWDGKQRQALLKSEELAYAQRPGRPSRLLDDRFDL
SGDKRNEKFRGGTGVGLKKVESGPIVLNITKELTREIFEEFPVVQDAYAKNVPRISESDF
WTRYFTSTLWERHRASVRKTALDEGARRKDDIFDVYLEDPDWEIEPRKKMPDSVETYLDL
AATEEDHGDVTTIRDVTMQAGKERSSLPLIRRFNQHSEKLLRAGRQEASVLTPSSELMEQ
IDMEDLHAPAAPAVIPLNVANEDSDGKSGPRGIFPGRSDADLLAMAEAEAVRVASWDADF
ASVCLPNPNPAEGGPGPGTKDYDAYAYQRDAQFVAQRVVRDMHNASNAEDAEYPHLPQKI
VDDMRSCHNAACEFLRQYWAAVLPPAAGTLATNQSPAVRAARAAKMAEYLLGTEGKVEAI
VMTAQMERADPVRVRAAMAPTLGAVAVALKREKARVGKA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcattcatccctcaaccattatcctgccaatgtcgagcgacacgttgaagttt
gaagtgtcgttcaaaaaggtgaccggcagtctgtcggttacccagacgctgattgcgtgg
aacccggcagtggcagggacgatggataggcagcaacaggcgctgaatcgagttacgaat
atgctcgcgagcaaggctgggtcggcgcgcacctcgctgaagctcgtgttccaagacgat
gtaccggttggcggactgttgttcacctttaccgggccgacaaaggatgcggaccggcag
gctgtgcaggaccgactcattccgttcgtgagcgctcaccggacgcctgcggcctcaacc
ccggttcccaatccagctctggcggcggttgcatctgggtccaatccggccagtacgccg
ggctcaccagccccagggacgccagggacaccagtgagcatcgcgcgcaagcgcaaagca
gaggacatttcgcccgcagacgctgaggcgcgccggcggatgaacaaggtccgcgagcgc
gttctgcgcagcaaccccacactccaggctctgcaccgtgagctagtacaagcccgacag
atcacagaggaagagttttgggacggcaagcagcgacaggcgctgctcaagtccgaggaa
ctggcgtacgctcagcgacctggtcggccatcgcgtctcttggacgaccgcttcgacttg
agcggggacaagcgcaacgaaaaattccgcggcgggactggtgtcggtctcaagaaggtc
gagagcggacctatcgtgttaaatatcaccaaggaacttacgcgcgagatctttgaagag
ttccccgttgtgcaagacgcgtacgctaagaatgtgccgaggattagtgagagcgacttt
tggacgcgctactttacaagtacactttgggagcggcatcgcgcaagtgtgcgcaagact
gctcttgacgagggtgcgcgccgcaaggacgacatctttgacgtgtacctcgaggacccg
gactgggagatcgagccacgtaagaagatgcctgactcggtggaaacctacctcgacctc
gcggcgaccgaggaggaccacggcgacgtgactacgatccgcgatgtgacgatgcaggca
ggcaaagagcggtcgagcctgcctctcatccgccgcttcaaccagcacagcgagaagctg
ttgcgcgcggggcgacaggaggcttcggtcctaacgccctcatcggagctgatggaacaa
atcgacatggaggacttgcacgcgcccgccgcgcccgcagtcatcccgctcaacgtcgcg
aacgaggactcggacggcaagagtggcccgcgcggtatttttcctgggcgttctgacgcc
gacctgcttgccatggccgaggccgaggcagtccgcgtcgcgtcctgggatgcggacttt
gcctccgtctgtctccccaacccgaacccggccgaaggcggtccaggcccgggcacgaag
gattacgacgcatacgcttaccagcgtgacgcgcaatttgtcgcccagcgcgttgtgcgc
gatatgcacaacgcgagcaacgccgaggatgcagagtatccccatctcccgcagaagatt
gtggacgacatgcgttcgtgccataacgccgcgtgcgagtttctgcgtcagtactgggcc
gctgtcctcccccccgctgctggcacactcgcaactaaccagtcgccggctgtccgtgcc
gcgcgcgcagccaagatggcagagtacctccttggcacagagggcaaagtagaggctatc
gttatgaccgcccagatggagagggctgaccctgtccgcgtgcgcgccgccatggcgcct
acgcttggcgccgtcgctgtcgcgctgaagcgtgagaaagcgcgcgttggcaaggcgtag
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