KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0311140
Entry
CcaHIS019_0311140 CDS       T09540                                 
Symbol
RAD50, CcaverHIS019_0311140
Name
(RefSeq) uncharacterized protein
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03440  Homologous recombination
ccac03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CcaHIS019_0311140 (RAD50)
   03450 Non-homologous end-joining
    CcaHIS019_0311140 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccac03032]
    CcaHIS019_0311140 (RAD50)
   03400 DNA repair and recombination proteins [BR:ccac03400]
    CcaHIS019_0311140 (RAD50)
DNA replication proteins [BR:ccac03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    CcaHIS019_0311140 (RAD50)
DNA repair and recombination proteins [BR:ccac03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     CcaHIS019_0311140 (RAD50)
    BRCA1-C complex
     CcaHIS019_0311140 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     CcaHIS019_0311140 (RAD50)
SSDB
Motif
Pfam: AAA_23 AAA_21 SMC_N AAA_15 SbcC_Walker_B ABC_tran AAA_29 AAA_13 Roc AAA_16 AAA_22
Other DBs
NCBI-GeneID: 85494914
NCBI-ProteinID: XP_060456309
UniProt: A0AA48L326
LinkDB
Position
3:complement(join(2954455..2954680,2954715..2955014,2955049..2955224,2955260..2955751,2955790..2955991,2956029..2956225,2956272..2956484,2956521..2956650,2956687..2956786,2956822..2956949,2956994..2957083,2957120..2957433,2957483..2957587,2957625..2957795,2957925..2958010,2958046..2958271,2958307..2958597,2958731..2958904,2958942..2959025,2959061..2959183))
AA seq 1275 aa
MASLNKLAIRGIRSFDDKHVQVIEFYSPLTVIVGHNGSGKTTVIECLKYATTGDLPPNTK
GGAFVHDPKMANEKEVKAQVRLRFWNVNRERMTVTRSLQVTTKKTGALTMKTLEGLLAKD
DGGASGKRNTISTKCSELDEEVPLLLGVSKAILENVIFCHQEDSNWPLAEPAALKKKFDD
IFEATKYTKAVDNIKALRKERTAEIKVDMERLKFLKNDKDRAQRMRQDHDGMVAKENSRT
TEAEELKSRFHVLKKDNEALYKRSTAFQHIFERHDSLIARKEMLMANRDRMMDGMTVLND
TTEELMHKFQNFETHLKSIEGKRDQQIETYERNVRERETSVRELSKTCNIPGYDYSSLED
AKVMDFVDRLQEMVRKAEADLKRLQTEGLRKERELQSELDDLANKKTTALATKSSKEDQI
RQLQTRIRNMEQSFDSFSSVDADISVLENDVSSLETRRETLEQEVQEARYDEQLRERRSA
VGQKEAAREKLNGELTALNRQADTRAQLSIKRSELESKKAQVEASVQNHSARFKELINSD
LTPETMEEKVTQAASRKDRELQEAESAAAANERTLSQLQASTNIAKQNLKARSEELTKLE
RSVSDVLQEAEQSTVDDGIKECETEIGILKDELADSESAKKWYQRVLDTSRSKKKCMGCD
RAIHEGEQGSIQVYLQARLQKLNAADQSELQSDLHEWTVQLDKLRAIQPSVERAKTLKRT
EVPVLEQQIDTNTAKLATVQVEVDETVQATKLAVRDLHAIKSAAVIMTRLVGEIDDLKAS
VQRLERDLQSTGSLKTVDDVQREIEQIASEIKTLQRDINFSLNEKELKLNTIRSIGDDLH
RKTMRLTDLRSKQERRKLDEQQLKEQQTQLTKLQGELKELDVATQAASAPWREKRDALGR
YRTERQDEDDSASMQVGTYQSSLYELESKHRSCQAYVTEGNDRKLRENESHLESMRQEIQ
ATNDRRVAIDKTVSGLQEDVSRAHVTRRNLKSNLDFRAEERSIEKVQEEMDELDLEGAAR
DRRSFNQEYKQKLEEETDVQNRWQLCSGQVMQMAEERKRLEKTLSSDYKNIDKLYRDQLI
KTKTSEVANNDLEKYAKALDNAILKYHSIKMDEINDTISHLWSKTYQGTDIDTLRIMSDH
DEHGTSARKSYNYRVVMVKNQVELDMRGRCSAGQKVLASIIIRLALAESFGQGCGVLALD
EPTTNLDQENINALAEALAEIIRERRRQTNFQLIVITHDEGFLQRLAAQDVLDYYWRVSR
DMNQKSVLERQRIGI
NT seq 3828 nt   +upstreamnt  +downstreamnt
atggcgtcccttaacaagctcgccatacgcggtatccgctctttcgacgacaaacatgtc
caagtgatcgagttctactcgcccctcactgtcatcgttgggcacaatggtagtggcaag
acgaccgtcatcgagtgtcttaagtatgcgacgaccggtgacctccccccgaacaccaag
ggcggcgcattcgtccacgaccccaagatggccaacgagaaggaagtgaaggctcaggtc
cgcctgcgcttctggaacgtcaaccgcgagcgcatgactgtcactcgcagtctccaagtc
accacgaagaagacgggtgcccttacgatgaagacgcttgagggattattggccaaggat
gacggtggggcatcaggaaagcgtaacaccatctccaccaagtgctcagagctggacgaa
gaggtcccactcttactcggtgtctctaaggccatcttggagaacgtcatcttctgccac
caggaagactccaactggccacttgccgagccagccgctctcaagaagaagttcgacgac
atcttcgaggcgacaaagtacaccaaggctgtggacaatatcaaggctctgaggaaggag
cgcactgccgagatcaaggtcgatatggaacgcctcaagtttctcaagaatgacaaggac
cgggcgcagcgtatgcgccaagatcatgacggaatggtcgccaaggagaactcgaggacg
acagaggctgaggagctgaagtctcgtttccacgtcctgaagaaggacaacgaggcgttg
tataaaagatccacagcgttccagcacatctttgagcgtcatgatagtctcatcgcgcgc
aaagaaatgctcatggctaaccgtgatcgcatgatggatggtatgactgtcctgaacgac
accaccgaggagctcatgcacaagttccagaacttcgaaacgcacctcaagtccattgag
ggcaagcgcgaccagcagatcgagacgtacgagcggaacgttcgcgagcgcgagacgtca
gtgcgcgagctgtccaagacttgtaacatccctggttatgactacagctcgctggaagat
gcaaaggtcatggactttgttgaccgacttcaagaaatggttcggaaggcggaagccgac
ctcaagcgtttgcaaactgaaggactacgcaaggagcgtgagctgcagtctgagctcgac
gacctcgccaacaagaagacgactgctctcgcgacgaagtccagcaaggaggaccagatt
cgtcagcttcaaacccgcatccgtaacatggaacagagctttgactcgttcagctctgtc
gacgccgatatcagcgtactcgagaatgacgtttcatcgttggagacccgccgagaaact
ttggagcaggaggtccaggaagcccgctatgatgagcagctgcgtgagcgccgctcagca
gtcggccagaaggaagcggcccgcgagaagctgaacggcgagttgacagcactcaaccgt
caggcggacacacgtgctcaactttccattaagcgttcagagctggaatccaagaaagcc
caggtcgaggcttcagttcagaaccactcggctcgtttcaaggagctgatcaactccgac
ctgacgccggagacgatggaggagaaggtgactcaggccgctagccgcaaggaccgcgag
ctgcaggaggccgagtctgcggcagcggccaacgagcggaccttgtcccagctccaggcg
tccaccaacatcgcgaagcagaacctgaaggcaaggagcgaggagcttaccaagctcgag
cgttctgtctccgatgtcctgcaggaagcagagcagtctactgtggacgacggaatcaaa
gaatgcgagactgagattggcatcctgaaggacgagcttgcagacagtgaaagtgcaaaa
aagtggtaccagagggtcctcgacaccagcaggtcgaagaagaagtgtatgggttgcgac
cgtgccatccacgagggcgagcagggctctattcaagtttaccttcaagcccgcttgcag
aagctgaacgctgcggaccagtcagagctgcagagcgacttgcacgaatggactgtccaa
ctggacaagctgcgcgctatccagccatcggtcgagcgcgccaagactctgaagcggaca
gaggtccctgttctggaacagcagattgacacgaacactgctaagctcgcgactgtgcag
gtagaggtggatgagacggtgcaggcaaccaagcttgctgtgcgcgatcttcacgccatc
aagagcgcggctgtcatcatgacccgtctcgtgggtgagattgatgacctcaaggccagc
gttcagcgcctggagcgcgacctccaatcgactgggtcgctcaagaccgtcgatgacgtg
cagcgcgagattgagcagatcgccagcgagattaaaaccctccagcgtgacatcaacttc
tcccttaacgagaaggaactcaagctcaacacgatccgtagcattggagatgacctgcac
cgcaagacgatgcgactcacagacctccgctccaagcaggagcgccgcaagttggacgag
caacagctcaaggaacagcaaactcaactgactaagctgcaaggagagctcaaggaactc
gacgttgcaacgcaggctgcatcagctccctggcgcgagaagcgtgacgcacttggccgc
taccgaaccgagcggcaggatgaggacgacagcgccagcatgcaggtcggcacataccag
tcaagcctgtacgagctcgagtctaagcaccgctcgtgccaggcgtacgtcaccgaggga
aacgaccgcaagctgcgcgagaacgaatcgcatctggaaagcatgcgccaggagatccaa
gcgacgaacgaccgtcgcgtggccatcgacaagacggtcagtgggcttcaggaggatgtc
tcccgtgcgcatgtcactcgtcgcaaccttaagagcaatctcgacttccgtgcagaggaa
cgctcaattgaaaaagtgcaagaggagatggacgaacttgacctcgagggagcagctcgt
gatcggcggagcttcaaccaagagtacaagcagaagttggaagaggagaccgacgtccag
aaccgatggcaactgtgctctggccaggtcatgcagatggctgaggagcgcaagcgcttg
gagaagacactctcttcagattataagaacattgacaagctatatcgcgaccagctcatc
aagaccaagacgagtgaggtcgcgaacaacgacctcgagaaatatgccaaggcgctggac
aatgcgattctcaagtaccactccatcaagatggacgagatcaacgacacgatcagccac
ctctggagcaagacgtaccagggtaccgacattgacacgctgcgcatcatgtcggaccac
gacgagcacggcacaagcgcacgcaagtcgtacaactatcgtgttgtcatggttaaaaat
caagtcgagctcgacatgcgtggccgctgctctgccggccagaaggtgctcgcgtccatc
atcatccgcctcgcgctagccgagagcttcggccagggatgtggtgtactcgccctggac
gagccgactaccaacctcgatcaggaaaacatcaacgcgctcgcggaggcgctggccgag
atcattcgcgagaggcgacgccagaccaacttccagcttatcgtcatcacccacgacgag
ggtttccttcagcgcctggctgcacaggacgttctcgactactactggcgcgtctcgcgc
gacatgaaccaaaagagtgttctggagcgccagcgcattggcatttag

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