Cutaneotrichosporon cavernicola: CcaHIS019_0401660
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Entry
CcaHIS019_0401660 CDS
T09540
Symbol
CcaverHIS019_0401660
Name
(RefSeq) uncharacterized protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0401660 (CcaverHIS019_0401660)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0401660 (CcaverHIS019_0401660)
Enzymes [BR:
ccac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CcaHIS019_0401660 (CcaverHIS019_0401660)
Spliceosome [BR:
ccac03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CcaHIS019_0401660 (CcaverHIS019_0401660)
Complex C
U4/U6.U5 tri-SnRNP related factors
CcaHIS019_0401660 (CcaverHIS019_0401660)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
85495216
NCBI-ProteinID:
XP_060456611
UniProt:
A0AA48L3M2
LinkDB
All DBs
Position
4:complement(join(375850..378959,379008..379056,379099..379137))
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AA seq
1065 aa
AA seq
DB search
MDLKQYINDNVVRMFGSSDSATVDFVHSMAMSAKTPGDLYNSLLGIGLDATPEAQQFATQ
VHSLVPRKSKPKAPKAQSKANTQKFSLIMDDDEPSSSKKKKSSKKDKDGDRDNGAVKLGR
SSRKRETEGNWESDPEDYEPPKRARFESPPRDEEPEEPPVPEETEEERLERERQDDLAER
DAFAERMKNKDKDRTRKITVDRGGDEEQARRMALADDPESRQAVMGDLRLRSRQEYLKKR
EAQQLDLLKLEVQDEKNLFRGQKLSKREIEEHERKVELIRIMEERQKIDDGTDGYMLPDD
YITEQGRLDSKKRKNALYQRYEERKVKGADGEFVTDIDQWEESQREKTSLVTGALDKEII
EDEYDYVFDEAQGIQFLQEGKMDGTLTVEAQALLNQVAEAEKKAQSIEETRKSLPIYDFR
DELLDAIRDHQVLIVVAETGSGKTTQLPQYLHEAGYTQGGLKVGCTQPRRVAAMSVAARV
AEEMGVRLGQECGYSVRFEDMTCDKTVLKYMTDGMLLREFLTDPELSTYSAIIIDEAHER
TLSTDILFGLVKDIARFRPELKLLISSATMNAQKFSAFFDEAPIFDVPGRRFPVDMFYTQ
QPEANYIHAAVTTILQIHTTQPKGDILLFLTGQDEIEACEENLKETMYALGDKVPELIVA
PIYANLPTELQTKIFEPTPEGARKVVLATNIAETSITIDGVVYVIDPGFVKQNNYNPKTG
MSSLVVEPISRASAQQRAGRAGRVGPGKAFRLYTKWAFRNELPQDTIPEIQRTNLAMVVL
MLKSLGINDILNFDFLDKPPAETIIRSFEMLYALGALNHKGELTRLGRRMAEFPVDPMLS
KAIIGSEVYKCTHEVLIIVSMVQESGSLLFRPKDKRVHADKAHKNFQKPGGDHFTLLNIF
NQWADSNYSQQFCHENFVQYKSLVRVRDIRDQLASLCDRVEVVIESLPNEVVPIQKAITA
GYFYNTARLDKGGSYRTTKNNHTVYLHPSSGLIGMQPPPRFILYYELVLTSKEYMRQCMP
IEGSWLSELAPHYFKKQEIDQMLGSASKIKMPKQVAQPTVGPVTS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaaacagtacatcaacgacaatgtcgtgcgcatgtttggctcgtccgacagc
gcaaccgtcgattttgtgcattcgatggccatgtccgctaagactcccggtgacttgtat
aactcgcttctcggcatcggcttggacgcgactccggaggcccagcagtttgccacccag
gtccactcccttgtcccgcggaagagcaaaccgaaagctcccaaagcccagagcaaggcg
aacacacaaaagttctcccttatcatggacgacgacgagccgtcgtcatccaagaagaag
aagagcagcaagaaggacaaggatggcgaccgcgacaatggtgccgtcaagttggggagg
tcatcacgcaagcgggagacagagggcaactgggagtcggatcccgaggattacgagcct
ccaaaacgtgcccgtttcgagtctccaccacgcgacgaggagcccgaggagccaccagta
cccgaggagacggaggaggagcgtctcgaacgcgagcgacaggatgacctcgcagaacga
gacgccttcgctgagcgtatgaagaataaagacaaagacaggacacgcaagatcacggtc
gaccgcggcggcgacgaggagcaggcgcggaggatggcgctcgccgacgatccagaaagc
cggcaggccgtgatgggcgacttgcggctgcgttcacgccaagagtacctcaagaaacgt
gaagcgcagcagctcgacctgttaaaactcgaggtgcaggacgagaagaatctgttccgc
ggacagaagctttcgaagcgtgagatcgaggagcacgagcgcaaggtcgagctgatccgg
atcatggaggagcgacaaaagattgacgacgggacagacggatacatgctcccagacgat
tatatcacggagcagggacgcctcgactcgaagaagcgcaagaacgcgctgtaccagcgc
tatgaggagcgcaaggtcaagggtgcggacggcgagtttgtgaccgacatcgaccagtgg
gaggaaagtcagcgagagaagacgagcctcgttacgggcgcgctggacaaggaaatcatc
gaagacgagtacgactatgtgttcgacgaagcccagggcatccagttcttacaagagggc
aagatggacgggacgctcacggtcgaagcgcaggcgttgctcaaccaggtcgccgaggcg
gaaaagaaggcgcaatcaatcgaagagacacgcaagtcgctgccaatttacgatttccgt
gacgaactcctcgacgccatccgtgaccaccaggtgctcatcgtcgttgccgaaacaggc
tcgggcaagacgactcagctcccacagtacctccacgaagccgggtacacacagggcgga
ctgaaggtggggtgcacgcagcctcgtcgtgttgccgccatgtcggtcgctgcccgtgtc
gcggaagagatgggtgtgcgtcttgggcaagaatgcggctactcagtgcgcttcgaggac
atgacgtgcgacaagacggtgctcaagtacatgaccgatggtatgctgctgcgcgagttc
ctgaccgatcccgagttgtcgacgtactcggcgattatcatcgacgaggcgcacgagcgg
acattgtcgaccgacatcctcttcggcctggtcaaggacattgctcgcttccgtccagag
ctcaagctcctcatctcgagtgccacgatgaacgcgcaaaagttctccgccttttttgac
gaggcacccattttcgacgttcctggccgtcgtttccccgtcgacatgttctacacccag
cagcctgaggcgaactacattcacgccgcggtgacgaccatcctccagatccacacgaca
cagccgaagggtgatattcttctcttcctcactggtcaggacgagattgaggcctgcgag
gagaatctcaaggagactatgtacgccttgggcgataaggtgccggagctcattgtcgcg
ccgatttacgccaacctccccaccgagctgcagaccaagatcttcgaaccgacgccggag
ggcgcacgcaaggttgtcctcgcaaccaacattgccgagacgtccatcaccatcgacgga
gtcgtgtacgtcatcgacccaggattcgtcaagcagaacaactacaacccgaagacgggc
atgtcttcgctcgtcgtcgagcccatctcgcgcgcgtcggctcagcagcgcgctggtcgt
gcgggccgtgttggtccaggcaaggcgttccgcttgtacaccaagtgggcgttccgcaac
gagctgccgcaggacacgatccccgagatccagcgcaccaacctcgcgatggttgtgctg
atgctcaagtcgctaggcattaacgatattctcaactttgatttcttggacaaacccccg
gctgagacgattatccgctcgtttgagatgctatacgcgctcggcgcgctcaaccacaag
ggcgagttgacgcgcctggggcgacgcatggccgagttccctgtcgacccgatgctgagc
aaggcgattatcggcagtgaggtgtacaagtgcacgcacgaggtgctcatcatcgtgtcg
atggtgcaggagagcggttcgcttctgttccgaccgaaagacaagcgcgtgcatgcggac
aaggcgcacaagaacttccagaagcctggtggtgaccacttcacgctcctcaacatcttc
aaccagtgggccgacagcaactatagccagcagttctgccacgagaactttgtgcagtac
aagtcgcttgtgcgagtccgcgacattcgggaccagctcgcgtcgctctgcgaccgtgtc
gaggtcgtcatcgagagcctgcccaacgaggttgtgcctatccaaaaggccatcacggcc
ggatacttctacaacacagcccggctggacaagggcggcagctaccgcacaacaaagaac
aaccacaccgtctacctccacccgtcgtcgggcctcattgggatgcagcccccgccccgc
ttcatcctgtattatgagctcgtgctcacgagcaaggagtacatgcggcagtgcatgccc
atcgaggggtcttggctctccgagctcgcaccgcactactttaagaagcaggagattgac
cagatgctcgggagcgcgagcaagatcaagatgcccaagcaggttgcgcagccgacggtt
gggccggtcacgtcgtga
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integrated database retrieval system
