Cutaneotrichosporon cavernicola: CcaHIS019_0404870
Help
Entry
CcaHIS019_0404870 CDS
T09540
Symbol
RFC5, CcaverHIS019_0404870
Name
(RefSeq) uncharacterized protein
KO
K10756
replication factor C subunit 3/5
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03030
DNA replication
ccac03410
Base excision repair
ccac03420
Nucleotide excision repair
ccac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CcaHIS019_0404870 (RFC5)
03410 Base excision repair
CcaHIS019_0404870 (RFC5)
03420 Nucleotide excision repair
CcaHIS019_0404870 (RFC5)
03430 Mismatch repair
CcaHIS019_0404870 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccac03032
]
CcaHIS019_0404870 (RFC5)
03036 Chromosome and associated proteins [BR:
ccac03036
]
CcaHIS019_0404870 (RFC5)
03400 DNA repair and recombination proteins [BR:
ccac03400
]
CcaHIS019_0404870 (RFC5)
DNA replication proteins [BR:
ccac03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CcaHIS019_0404870 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
CcaHIS019_0404870 (RFC5)
Chromosome and associated proteins [BR:
ccac03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CcaHIS019_0404870 (RFC5)
DNA repair and recombination proteins [BR:
ccac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CcaHIS019_0404870 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
CcaHIS019_0404870 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
AAA_22
Rep_fac_C
AAA_assoc_2
AAA_11
AAA_16
AAA_33
DNAX_ATPase_lid
Methyltransf_31
Motif
Other DBs
NCBI-GeneID:
85495537
NCBI-ProteinID:
XP_060456932
LinkDB
All DBs
Position
4:join(1250736..1250756,1250790..1250855,1250890..1250949,1250997..1251047,1251082..1251274,1251307..1251794,1251828..1251991,1252027..1252054)
Genome browser
AA seq
356 aa
AA seq
DB search
MSLWVDKYRPRTLDDLSYHEELSSRLRSLAASGDFPHIMFYGPSGAGKKTRIMATLRELY
GPGVEKLRIDQRVFVTPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQ
VDLNAKQKFKVVIINEADALTRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCL
LVRVAAPTDEEMTGVLNHVAKKERFVLPAAAAEQITSASDGNLRKALLVLEAMRMQQPDM
RGGADVARPDWETYCAKVADSILGEQSPQRLLEVRGKLYELLSHCIPPAVVLKTISERIV
DRVDDELKPQIVHWAAHYELRMRQGSKKIFHLEAFCAKVMMVVKHFNLMGVVEDWE
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctttgggtcgacaagtaccgcccacgtacgctcgatgacctgtcgtaccacgag
gagctgtcctcgcggttgaggtcacttgccgcgtccggtgacttcccgcacatcatgttc
tacgggccatcaggcgcaggcaagaagacgcgcatcatggcgaccttgcgcgagttgtac
ggaccaggcgtggagaagctccgcatcgaccagcgtgtcttcgtcaccccctcaaaccgc
aagctcgacgtcaacgtggtccagtccaactaccatattgagctcaccccctcagatgtg
gggatgtacgaccgcgtcgtgatccaagatatattgaaggagattgcccagacgcagcag
gtcgacctgaacgcaaaacaaaagttcaaggtggtgatcatcaacgaggccgacgcgctc
acccgcgatgctcaggctgcactacgtcgcacaatggagaagtacatgaccaacatgcgc
ttgatcatgtgcgcaaactcaacgagcaagatcatcgcgcccatccgctctcgctgtctt
ttggtgcgcgtcgcagccccaaccgacgaggagatgactggcgttctgaaccatgtggcg
aagaaggagcgctttgtgctcccggcagctgcggcggagcagatcacgtccgcatctgac
ggcaacctccgtaaggcgctgctcgtgctcgaggccatgcggatgcagcagcccgacatg
cgtggcggggcggatgtcgcgcgccccgattgggagacgtactgtgccaaggtcgccgac
tccattcttggggagcagagcccacagcgcctcctcgaggtgcgaggcaagctgtacgag
ctgctgtcgcattgcatcccgccggccgttgtgctgaagacgatctctgagcgtatcgtc
gaccgcgtcgatgacgagctcaagccccagatcgtgcactgggctgcacactacgagctg
cgcatgcgccaagggtccaagaagatcttccatctcgaggcattctgcgccaaggtcatg
atggtggtcaagcatttcaacctgatgggcgtggtcgaggactgggagtag
DBGET
integrated database retrieval system
