Cutaneotrichosporon cavernicola: CcaHIS019_0405930
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Entry
CcaHIS019_0405930 CDS
T09540
Symbol
SYF1, CcaverHIS019_0405930
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0405930 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0405930 (SYF1)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0405930 (SYF1)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CcaHIS019_0405930 (SYF1)
Spliceosome [BR:
ccac03041
]
Complex B
Other components
Prp19-related factors
CcaHIS019_0405930 (SYF1)
Complex C
CcaHIS019_0405930 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_12
MIT
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
85495643
NCBI-ProteinID:
XP_060457038
UniProt:
A0AA48QVW7
LinkDB
All DBs
Position
4:join(1518838..1519629,1519666..1519860,1519960..1520813,1520851..1521970)
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AA seq
986 aa
AA seq
DB search
MVDAQSSLLAELASRFPLTVPIPTPLTNPELIRTSDLAVEEDLLHNPDNMRLWLNHIAAI
KDRIGKALPPKTHDLSPEEKMLGLLAYPVARDGLRELVMVYERALAVFPTNYKLWKSYFL
TRQEYVMGTLTEDAVKARAHQAKRGAAYKTNVKELLDDAEDTNIWEGGLDGVVGFEEWRA
LFATGERMLHWLSNLPVPWLLHLSMMLHPKCPPMFKRTYARRTFDRALRTLPPSLHGRIW
GLYLRWAEIVGGEAGERVWRRFLKIDSSLTERHITYLLEAEPPQPLAAAKYLLLLARRAA
QNLYSSLEGKSPYQLFVDFLELVEKYADDHKSGDRLNRIAGPAVPTSSRGILHKPPPNLG
GAGKESDTAVLEDEDTDPSNPRPLDVEGIVLRDGLNVYKDQAGRLWTGLATYWIKRGELD
RATATFERGLAEVVTIRDFTQIFDAYSEFSETIVSSLMDALADEENLEDEDFDVEETEGE
LDARMKAFEDLMDRRPFLVNDVLLRRNPNDVVEWEKRVALHAGDDEAIVATYLKAIDTIN
PRKTTSPLYPLYVNFAKFYEEGGSVDPSTGEPGNDPDIGEARKIFEKATRVSFKAVDELA
EVWCEWAEMELRNEDYEEAIRLMQRATTVPKNTKVDYYNDNLPPQTRMFKSLKLWSFYSD
LEESIGSVESTKAVYDKIMELKIANAQTIVNYATFLEENKYFEESFKVYERGIEVFNFPI
AFEIWNIYLSKFVKRFGGTKLERTRDLFEQALENCPPKFCKPLYLMYAKLEEEHGLAKRA
MGIYDRAASTVQDADKFQMYTIYVAKATANFGLPATRPIYERAIGALPDRETAIMCRRFA
QMERKLGEIDRARAIYAHASQFCDPRVDKAFWAEWSEFEIDTGSEETFREMLRIKRAVQA
SYNTNESFLAAQKAAAVSGGEKPTDAAEEAAREAADPMAAMEREMGGGGAPAFVASTLKA
QAQHEEMVPAEGAANPDAIDIADDEF
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacgcgcagagctcgctccttgcggagctcgcgtcgcggttcccgctgacggtg
ccgataccgacacccttaacgaatccggagctcatccgcacctcagacctcgcagtggag
gaggacctcttgcacaacccggacaacatgcgtctgtggctcaaccacatcgcggccatc
aaggaccggatcggcaaagcactgccgccgaagacacacgacctgtcgcccgaggagaag
atgctcggtctcctcgcataccccgtggcgcgggatgggctgcgcgagctggtgatggtg
tacgagcgcgcactcgccgtcttcccgacaaactacaagctgtggaagtcgtacttcctt
acacggcaggagtacgtgatgggtactctcaccgaggacgcggtcaaggcgcgcgcgcac
caggccaagcgcggagcggcgtacaaaaccaacgtcaaggagctgcttgacgatgccgag
gacacgaacatttgggagggcggtcttgacggcgtcgtcggcttcgaggagtggcgcgct
ctcttcgccacgggcgagcgcatgctccactggctcagcaacctccccgtcccatggctc
ctccacctgtccatgatgttgcaccccaagtgcccacccatgttcaagcggacgtacgcg
cgccgcacgttcgaccgcgccctccgcaccctcccacccagtttgcatggacgcatatgg
ggcctgtacctccgctgggctgagattgtcggcggcgaagcgggcgagcgcgtctggcgc
cgcttcttgaagatcgactcgtccctcaccgagcgccacatcacgtaccttctcgaggcg
gagccgccccaacccttagccgcggcgaaatacctgctgttgctggcacgtcgggcggcg
cagaacctctactcctcgcttgagggtaagtccccgtaccaactcttcgtcgacttcctc
gagctcgtggagaagtacgcggacgatcacaagtctggcgatcggctgaaccggattgcg
ggaccggccgtgccaacttcctcgaggggcatattgcacaagccaccaccaaatctcggc
ggggctggtaaggagtccgacacggcggtcctggaagacgaagacacggacccgtccaat
ccaaggccactggacgtcgagggtatcgtcctccgcgacggtttaaatgtatacaaggac
caggctggacgactgtggactggccttgcgacgtactggatcaagcgcggcgagctggac
cgtgctactgcgacctttgaacgaggcctggccgaggttgtcacgatccgcgactttacg
cagatctttgacgcatactccgagttctcagagacgattgtgtcgtcgctgatggacgcc
cttgccgatgaggagaacctcgaggacgaggactttgacgttgaggagaccgagggcgag
ctcgacgcccgcatgaaggcgttcgaggacctgatggaccgccgtccgttcctcgtaaac
gacgtgctgctacgccggaacccgaacgacgttgtcgaatgggagaagcgggtcgcgttg
cacgcgggtgacgacgaggccatcgtcgcgacgtacctcaaggccatcgacacgatcaac
ccccgcaagaccacgagtccgctgtaccctctctacgtcaactttgccaagttttacgag
gagggtgggtctgtggaccccagcaccggcgagccaggtaacgaccccgacattggggag
gcgcgcaagatcttcgagaaggcgacgcgtgtgtcgttcaaggccgtcgatgagctggcc
gaggtatggtgcgagtgggccgagatggaattgcggaatgaggactacgaggaggcgatc
cggctcatgcagcgcgcgacgacggtgccgaagaacaccaaggtcgactactacaacgac
aacctaccgccgcagacgcgcatgttcaaatcgctcaagctgtggtcgttctactcggac
ctcgaggagtcgatcgggtcagtcgagtcgaccaaggcagtgtacgacaagatcatggag
ctcaagattgcgaatgcccagacaatcgtcaactacgcaaccttccttgaggaaaacaag
tactttgaggagagcttcaaggtgtacgagcgcggcatcgaggtgttcaacttcccgatt
gcgttcgagatctggaacatctacctgtccaaatttgtcaagcgtttcggggggaccaag
ttggagcgaacgcgcgacctgttcgagcaggcgctcgagaactgcccacccaaattctgc
aagcctctgtaccttatgtacgccaaactcgaggaggagcacggtctcgccaagcgcgcc
atgggcatctacgaccgtgccgcgtcgacggtccaggacgccgacaagttccagatgtac
accatctacgtcgccaaggcgacggctaactttggtctccctgccacgcggccaatctac
gagcgggcgatcggcgcgctcccggaccgcgagaccgcgatcatgtgccgccgttttgcg
cagatggaacgcaagcttggcgagatcgaccgtgcgcgcgcgatctacgcccacgcgtcg
cagttctgcgatccgcgcgtcgacaaggcgttctgggcagagtggagcgagttcgagatc
gacacgggctcagaggagacgtttcgcgagatgctccggatcaagcgcgctgttcaggcc
agctacaacacgaacgagagcttcctcgctgcgcagaaggctgcggctgtcagcggtggc
gagaagccgacggatgccgccgaagaggccgcgcgcgaggctgccgatcccatggcggcg
atggagcgcgagatgggcggtggcggtgcgccggccttcgtcgcttccaccctcaaggcg
caggcgcagcacgaggagatggtccctgccgagggcgcagccaacccggacgcgatcgat
attgcagatgacgagttctag
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