Cutaneotrichosporon cavernicola: CcaHIS019_0406540
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Entry
CcaHIS019_0406540 CDS
T09540
Symbol
CcaverHIS019_0406540
Name
(RefSeq) uncharacterized protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CcaHIS019_0406540 (CcaverHIS019_0406540)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0406540 (CcaverHIS019_0406540)
Enzymes [BR:
ccac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CcaHIS019_0406540 (CcaverHIS019_0406540)
Spliceosome [BR:
ccac03041
]
Complex C
Other components
Step II factors
CcaHIS019_0406540 (CcaverHIS019_0406540)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
ABC_tran
ATPase
Herpes_ori_bp
Flavi_DEAD
SRP54
PhoH
AAA_23
AAA_24
Motif
Other DBs
NCBI-GeneID:
85495704
NCBI-ProteinID:
XP_060457099
LinkDB
All DBs
Position
4:complement(join(1673595..1674108,1674152..1674772,1674807..1675383,1675420..1675782,1675815..1676472,1676512..1677431,1677463..1677562,1677600..1677650))
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AA seq
1267 aa
AA seq
DB search
MADKGKPEDFVHQVAIELSRMMNLVNPNDTLAQRVVEIARGNRSGTAFVNAMSTFGKFSD
EALLTLHQRILAHEALIASRSQLDKVEGMDHDSGDVLAAEAPRRGGLRQGSGPQFKAPAP
VARESRLGLDKLAAQKRAEAGEPPSKRAKVESGREEENGGVFKVPAVPVRREARRVKPEE
TPSHGGGISDSAKARLEEYRRNRNKPSTAVSASNERRERGGLGDFQGRANRGSYNDGRDR
ERDRRDDRDRWRDDRRDDRRDDRRDDRRGGKSWDAAPTPRTSRPDRDGDGSLRVPNRGWD
ETPGRPGWGRSKRSWDETPGRKSRPDSPEFEVDAKEWEEEQVRIDRDWYSYDDEGAVAGD
DEHNPFAQWSTLEQSKEAEMQQKVAKRQTARQAQYSADNDKWENNRMLTSGVIQAGDLDQ
DFEDDADSKVHVLAHDMKPPFLDGSSIYTRQLEPVSAVRDPTSDMAVFSRKGSALVRERR
ERQEREKAAAKAASMAGTTLGNIMGVKDEPDLGAEGQKDTVDENTSYKAGSQFATHLKKQ
EGASDFARTRTLKEQREYLPAFAVREELMRTLRDNQVTVVIGETGSGKTTQLAQFLYEEG
YCQNGMICCTQPRRVAAMSVAKRVSEEMECELGGLVGYSIRFEDVTSKATRIKYMTDGIL
LRESLTDQDLDGYSVIILDEAHERSLSTDIIMGLLRKIITRRRDLKLIVTSATMNAEKFS
DFFGNAAQFTIPGRTFPVEVFHSKSPCEDYVDSAVKQVLQIHLTSPKGDVLVFMTGQEDI
EATCSVIEERLEQLDDPQPLAVLPIYSQMPADLQAKIFQPTSDGRRKVIVATNIAETSLT
VDGILYVVDGGYAKVKVYNPKVGMDALQITPISQANAGQRTGRAGRTGPGYCYRLYTETA
YLNELLPNNIPEIQRTNLANTVLLLKTLGVKNLLEFDFMDPPPQDNIIQSMWQLWYMGAL
DNLGDLTDEGKAMSNFPMDPALGKMLIVAEKNGCSAEMLTIVSMLSVPSVFYRPPQRADE
SDAAREKFFVPESDHLTLLHVYTQWKNNGFSDHWCMKHFLHPKILRKAREVRGQLEDIMK
TQKMRVLSCGTDWDIVRKCITAGYFHQAARVKNLGEYVNIRQGTPCVLHPTSALYGLGYM
PDYVVYHELVLTSKQYMMCVTSVDPYWLAELGGVFFSIRERNFDGLQRARAAQDFNKKTE
LLAKMAEQREELERKKADELRAEAVARTPKIGGVTPRHAATPRSAGIGAGTRLNRSSATP
RRRGGGI
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagggcaagcccgaggactttgtccaccaggtagccatcgagctgtcgcgg
atgatgaacctcgtgaatccgaatgacacgctcgcgcagcgtgtcgtcgagattgcgcgc
ggcaataggtccggcacggcgtttgtgaatgcgatgtcgacgttcggcaagttcagcgat
gaagcgctcttgacactgcaccagcgtattctggcgcacgaagccctcatagcgtcccgc
tcccaactggacaaggtggaagggatggaccacgactctggcgacgtgcttgctgccgag
gcgccgcgacgcggtgggttgcgacaaggctccgggccgcagtttaaggcgccggcaccg
gtcgcgcgcgaatcacgactgggcctcgacaagctggcagcacagaagcgcgccgaggcc
ggagagccgcccagcaagcgcgccaaagttgagtcgggccgggaggaggagaacggagga
gtgttcaaggttcccgctgtaccggttcggcgggaggcgcggcgtgtcaagcccgaagag
acgccgagtcatggcggtgggatctcagactcggcgaaagcacggttggaagagtaccgc
cgtaatcggaataagccgagtaccgctgtgtcggcgagcaatgagcggagggagcgcggg
ggattgggcgacttccaggggcgcgcaaaccggggttcgtacaacgacgggcgcgatcgt
gagcgagaccggagggacgaccgcgacagatggcgcgatgaccggcgtgacgaccgtagg
gacgaccgtagggacgaccgccgtggaggcaagagctgggatgctgcgccaacaccgcgc
acctcgcgcccagatcgcgacggcgatgggagcctgcgcgtgccgaaccgcgggtgggac
gagacaccgggtcgtcccggttggggccgcagcaagcggagctgggacgagacacctggg
cgcaagagccggcctgacagccccgagttcgaggtcgacgccaaggaatgggaggaggag
caggtccgcatcgaccgcgactggtactcttacgacgacgagggtgctgtggcgggcgat
gacgagcacaacccgttcgctcagtggagtacgctcgagcagtcgaaggaggccgagatg
cagcagaaggtcgcgaagcggcagacggcgcggcaggcgcagtacagtgccgacaacgac
aagtgggagaacaaccgcatgctgacttcgggcgtcatccaagccggcgacctcgatcag
gactttgaggacgacgccgacagcaaggtgcacgttttggcgcacgacatgaagccgccc
ttcttggacgggagcagtatctacacgcgccagctggagcctgtcagcgccgtgcgcgac
cctacgtcagacatggccgtgttctctcgcaagggtagcgcgctggtccgtgagcgccga
gagcgacaggagcgcgagaaggcggccgctaaggctgcgagcatggccggcacgacactc
ggcaatatcatgggcgtcaaggacgagccggacctcggtgctgagggtcagaaggacacg
gtggacgagaacaccagttacaaggccggctcgcagttcgccacccacctcaagaaacag
gagggcgcgagtgactttgcgcgcacgcgtacactcaaggagcagcgcgagtacctcccc
gcctttgctgtgcgggaagagctgatgcgcacactgcgcgacaatcaggtgacggttgtg
attggcgagacgggttcgggcaagacgacacagctcgcccagtttctctacgaggagggg
tactgtcagaacgggatgatctgctgtacgcagccgcgccgtgtcgcggccatgagtgtc
gccaagcgtgtcagcgaggagatggagtgcgaacttggcgggctggtgggatactcgatc
cgtttcgaagacgtgacttccaaggcgacgcggatcaagtacatgacggacggcatcctg
ttgcgcgagtccctcacggaccaggacctcgacgggtacagcgtcatcatcctcgacgag
gctcacgagcgctcgcttagtaccgacattatcatggggttgctgcggaagatcatcacg
cgccgccgcgacctgaagctgatcgtcacctcggccaccatgaacgcggaaaagttctcc
gatttctttggcaacgccgcacagttcaccattcctgggcgcacgttcccggtcgaggtc
ttccactccaaatcgccatgcgaggactacgttgatagcgccgtcaagcaggtgctccag
atccacctgacgagtcccaagggcgacgtcctcgtcttcatgacgggtcaagaagacatt
gaagccacatgttcggtgattgaagaacggctcgagcagctcgacgacccacagccgctt
gcggtattgccaatctactcgcaaatgccggccgatctgcaggctaagatcttccagccc
acctctgacggacggcgcaaggtcatcgtggctaccaacatcgccgagacgtcgctcacc
gtcgacggtatcctgtatgttgtggacgggggatacgccaaggttaaggtgtacaacccc
aaggtgggaatggacgcgctgcagatcacgccgatctcgcaggccaacgctggtcaacgt
actggtcgtgccgggcgtactggtcctggctactgctaccggctgtacacggagacagcg
tacctgaacgagctgctgccgaacaacatccccgaaatccagcgcaccaaccttgccaac
actgtgctcctccttaagacgctcggagtgaagaacctcctcgagttcgatttcatggat
cccccgccgcaagacaacatcatccaatccatgtggcagctgtggtacatgggtgcgctc
gacaatctcggcgacctcacggacgagggcaaggcgatgagcaacttcccaatggatccc
gcgctaggcaagatgctcatcgtggccgagaagaacgggtgcagtgccgagatgctcacg
attgtgagcatgctcagcgttccgtccgtgttctaccgtcccccccagagggcggacgag
agtgatgctgcgcgagagaaattcttcgttccagaatcagaccacctcaccctcctgcac
gtttacacgcaatggaagaacaacgggttcagcgatcactggtgcatgaagcactttctg
catcccaagattctgcgcaaggcgcgcgaagtccgcggccagctcgaggacattatgaag
acgcagaagatgcgggttctgtcctgcggcacagattgggatattgtgcgaaaatgcatt
acagcaggatacttccaccaagcggcgcgagtcaagaacctcggcgaatacgtaaacatc
cgacaaggtaccccctgcgtccttcaccccacgagtgcgctctacggcctcggatacatg
cccgactatgtcgtgtatcacgagctggtcctcacctcgaaacagtacatgatgtgcgtg
accagtgtcgatccgtactggctcgccgagttgggtggcgtcttcttctccattcgcgaa
cgtaactttgacggattgcagcgggcacgtgcggctcaggattttaataagaagactgag
ctgcttgccaagatggctgagcagagggaggaactggagcgcaaaaaggccgacgagttg
cgcgccgaggctgttgcgcggacaccaaagattggcggcgtgaccccacgccatgcggcc
acgccccggtcggcggggatcggcgccggcacgcgcctcaaccggtccagcgcgacgccg
cggaggcgcggaggcggcatctaa
DBGET
integrated database retrieval system
