Cutaneotrichosporon cavernicola: CcaHIS019_0407330
Help
Entry
CcaHIS019_0407330 CDS
T09540
Symbol
RIA1, CcaverHIS019_0407330
Name
(RefSeq) uncharacterized protein
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CcaHIS019_0407330 (RIA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccac03009
]
CcaHIS019_0407330 (RIA1)
Ribosome biogenesis [BR:
ccac03009
]
Eukaryotic type
Pre-60S particles
GTPases
CcaHIS019_0407330 (RIA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFL1
EFG_C
EFG_III
GTP_EFTU_D2
EFG_IV
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
85495783
NCBI-ProteinID:
XP_060457178
UniProt:
A0AA48L4R9
LinkDB
All DBs
Position
4:complement(join(1886789..1888188,1888234..1889734,1889769..1889948,1889981..1890142,1890175..1890210))
Genome browser
AA seq
1092 aa
AA seq
DB search
MSTYAAPLENTRNVTIVAHVDHGKTSFADSLLSSNNIISNRMAGKLRYLDSREDEQERGI
TMESSAVSLRFDMMRAGPDGPVASKHICNVIDTPGHVDFASEVSMASRLCDGALVLVDVW
EGVCTQTIAVLRQAWIDRLRPLLVINKMDRLITELQLSPIEAYHHISRLIEQVNAVMGSF
YASERMEDDLRWREAREKRLKERAEAESAGDAPEGDGDDEHEFEEREDEDIYFSPERGNV
LFASALDGWAFRLGKFARLYADKLGVKEGNLRRALWGDWFLDPKTKRVVGRKGLNGRPLK
PLFVQFVLENIWKVYNVVLEEHQYNPEATSKIVKALNVRVAPRELKSKDSRNLLTSIMQQ
WLPLSTATFQAVVDVIPAPNAAQAIRIPFMLHPQEARASSTPLQPVGGLEKALFACDQRP
EAPLVAYVSKMFAVRRGDLPQFKPREMTAEEMRARGREERERRAALAAKQGEVSDPNDLA
KPLESLNLDVAVEEPKPAADADAEVLLGFSRVFSSVLRRGATVTVTLPKYDAELGPNHSR
NAKHMRQATVSDLYMMMGRDLVAVDCVPAGHVCAIAGLDNIVPRNGTLCAANANGDAPGA
DGLVNLAGVNMQAAPIVRVALEPLNPSDMPKLIEGLQILNQADPCAEYIVQETGEHVILT
AGELHLERCLKDLRERFAKCEIQASEAIVPFRETAIKAQDMAAPKTAGEPRGVVLGSLYD
GMVTFKLRAVPLPPPVIEFLLAHQNTIGTMLVHRAKDAEEEEEEDPDQREAEAGVRTLTP
EQFWTDLEARFDEAGGEWAGAADRVWSFGPKKVGANVLLDPIGKGGLRLRGREAVFAAAR
AAGETAEEALALADAAEDAERTAEEKAEVADAQESEAEIARRLRDFDTSIEAGFQLATFQ
GPLCAEPVVGMAWILEQLTYTPTESGRGAAVVGALISGVRDAARAGMLDWSPRIKLAMYT
CDIQASTEVLGKVYGVVARRRGRIVAEEMKEGTDFFTVRAMLPVVESFGFADEIRKRTSG
AASPQLVFAGYEVLDLDPFWVPTTVEELEDLGEKADRANVAKGYVDAVRKRKGMFVEKKM
VEFAEKQRTLKR
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtacgctgcaccactagagaacacacgcaatgtcacgatcgtcgcgcacgtc
gatcacggcaagacgtcgtttgcggacagcctcctgtccagcaacaacattatcagcaac
cgtatggccggtaagctccggtacctcgactcgcgagaggacgagcaggaacgcggcatt
actatggagagcagtgctgtgtcgcttcgtttcgacatgatgcgcgctggacccgatgga
ccggtcgcgtccaaacacatctgtaacgtcattgacacacctggacacgtcgactttgcg
agtgaagtgtcaatggcctcgcggttgtgtgacggcgcgctcgtccttgtcgacgtgtgg
gagggagtgtgcacgcagaccatcgcagtgttgcggcaagcatggatcgaccgcctccgt
cccctccttgtcatcaacaagatggatcgcctgattacagagcttcagctgtcgccaatc
gaggcgtatcaccacatctcgcgcttgatcgagcaagtgaatgcggtcatgggatctttc
tacgcatctgagcgcatggaggacgacttgcgatggcgcgaagcccgagagaagcgcctc
aaggaacgcgcggaggcagaatcagccggcgatgcaccagaaggcgacggtgatgacgag
cacgagtttgaagagcgcgaagatgaggacatttacttctcacccgagcgcggcaacgtg
ctcttcgcctctgcactcgatgggtgggcgtttcgcctcggcaagtttgcacgcctgtac
gctgacaagctcggagtcaaagagggcaacctccgccgtgcattgtggggtgactggttc
ctggacccgaagacgaaacgcgtcgtcgggcgcaaagggctcaatgggagaccgctgaag
cccctcttcgtccagtttgtgcttgagaacatctggaaggtgtacaatgtcgtcctcgag
gagcaccagtacaaccccgaggcgacgagcaagattgtcaaggcgctcaatgtgcgcgtg
gcgccccgagagctcaagtccaaggactctaggaacctcctcacgtcgattatgcagcag
tggctaccactcagcacggctaccttccaagcggtggtggacgtcatcccggccccaaat
gctgcgcaggcaatccgcatccccttcatgcttcatccacaggaggcgcgcgcctcgtcc
actcctcttcagcccgtcggcggactcgagaaggcactcttcgcatgcgatcagcggccc
gaggctcctctcgtcgcatacgtctcgaaaatgttcgctgtgcgccgtggcgacctcccg
cagttcaagccgcgcgagatgacagccgaggagatgcgtgcccgcggacgtgaagagcga
gagcgccgcgcagccctcgcagccaagcagggtgaggtttcagaccccaacgacctcgca
aagccgcttgagagcctcaaccttgacgtcgcggtggaggagcctaagcctgcggcggac
gccgatgccgaggtcctgctgggcttctcgcgcgtcttctcgtctgttctccgacgcggt
gccaccgtcaccgtcacgctacccaagtacgacgccgagcttgggcccaaccactcccga
aacgccaagcacatgcgccaagcgaccgtctccgacctgtacatgatgatgggccgcgac
cttgttgctgtcgactgcgtcccggctggccatgtgtgcgctattgccggcttggacaat
atcgtcccccgcaatggcacgctgtgtgctgcgaacgccaacggcgacgcacccggcgcg
gacggcctcgtcaacctcgctggcgtcaacatgcaggctgcgcctattgtgcgcgttgca
ctagagccgttgaacccttccgacatgcccaagctcatcgagggcttgcagatcctaaac
caggcagacccttgtgccgagtacatcgtacaggagacgggcgagcatgtcattctcacc
gcaggagagctgcatctcgagcgctgcctcaaggatctgcgggagcggttcgcaaagtgc
gagatccaggcgagcgaggcaattgtcccattccgcgagacggcgatcaaggcgcaggac
atggcggctcccaagacggctggcgagccacgcggcgttgtcctcggatctttgtacgac
gggatggtgactttcaagttgcgcgccgtgcctctcccacctcctgtcatcgagttcctg
cttgcgcaccaaaacacgatcggaaccatgctcgtgcatcgcgccaaggacgccgaggag
gaggaggaggaagatcctgaccagcgcgaggccgaggcgggtgtgcgcacgctcacgccc
gagcagttctggaccgatctcgaagcgcgcttcgacgaggccggcggcgagtgggctggg
gcagcggatcgtgtttggtcattcgggccgaagaaggtcggcgccaacgtcctcctcgat
cccattggcaagggtggtctgcgcttgcgcggacgcgaggcggtcttcgcagccgctcgc
gcagctggcgagacggctgaggaggcgctggcgttggctgacgcggccgaagacgccgag
cgcacggcggaggagaaggccgaagtggccgatgcgcaggagagcgaggccgagatcgcg
cgccgcctgcgcgactttgacacgtcgatcgaggcaggtttccagctcgcgacattccag
ggcccgctatgtgccgagcctgtcgtcggaatggcctggatcctcgagcagctgacgtac
acgccgaccgagtcgggccgtggcgctgccgtagtcggcgctctgatctcgggtgtacgt
gacgccgctcgagcaggtatgctcgactggtccccgcgcatcaagttggcaatgtacacc
tgtgacatccaagcctcgaccgaggtgcttggcaaggtatatggagtcgttgcgcgccgc
cgcggccgcatcgtagccgaggagatgaaggagggcaccgacttcttcactgtccgtgcc
atgctgcctgtcgtcgagagtttcgggttcgccgacgagatccggaaacgcacgtctggg
gccgcgtcaccccaactcgtgtttgcgggatacgaagtactggacctagacccgttctgg
gttcccacgacagtcgaggaacttgaggacctgggcgagaaggcagaccgcgccaatgtc
gccaagggctacgtcgatgccgtgcgcaagaggaagggtatgtttgtcgagaagaagatg
gtcgagtttgcggagaagcagcggacgctcaagcgctag
DBGET
integrated database retrieval system
