Cutaneotrichosporon cavernicola: CcaHIS019_0407360
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Entry
CcaHIS019_0407360 CDS
T09540
Symbol
PCF11, CcaverHIS019_0407360
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CcaHIS019_0407360 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0407360 (PCF11)
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0407360 (PCF11)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CcaHIS019_0407360 (PCF11)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CcaHIS019_0407360 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
zf_UBZ
Zn-C2H2_12
zf-C2H2_4
DUF7340
DUF7351
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
85495786
NCBI-ProteinID:
XP_060457181
UniProt:
A0AA48L4P4
LinkDB
All DBs
Position
4:join(1903670..1903873,1903907..1904787,1904824..1904995,1905032..1905265,1905308..1905568)
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AA seq
583 aa
AA seq
DB search
MQNGWHGGPPQPPQDPFRAWYADKLATLTFNSRAIIQDLSIEAVKQRDAYNWAGMNAIAE
ELEAAIYMAPPQGKLPLLYLLDSISKNAGPPYTDEFFARFLPQLYVATYRQVDGVTKNKM
VEMLRLWRTGAGGGELYPVGVREQVERDLFGSTGLPPPPQMAPPPLTQANVQAELRQFLQ
QKEDEMAKEFSTGLAKTVNVLVQIDKLLSTTQVNRDELLGIKQQIGAMKGGHQPASGQLS
RQQAVPAARPPVPAFQPRETFPPQQRPPFPQYIQPPQRFATPPQVPTPPQIHAPLPTPVT
LPKLGALPLPSNVADILANLSKSGVLSQPITPEPINKRSGLEAYEDMILALNMTVDVFDL
TKLSLPVSHLPVRCKQCGERFPEGENTLQAHMDWHFRRNRKERETEGRGAHRRWLPRADK
WIHENSEAGPSEPKPETVTSTKLTAERLAALKRKWVRAPADPAKATPCPICKEQFKPEWS
EDEEEWVFNNAVNVHGTIFHATCRAEKMSSAVAARLLGTERGVSRSPAPESVPGSPRQRL
SASPAKSPARLPPSPTAKRKAADDGTEEAKRVKLEPGTEEGAA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacggatggcacggcggtccgccgcaaccgccacaagatccgttccgcgcatgg
tacgcggacaagcttgcgacactcacgttcaactcgcgtgccattattcaggacctctcc
atcgaggccgtgaagcagcgagatgcgtataactgggcaggcatgaacgcgatcgctgag
gagcttgaggctgccatttacatggccccaccgcagggcaaactcccattgttgtacctc
ctcgattcgatctcgaagaacgctggcccgccctacaccgacgaattttttgcgcggttc
cttccccagctctacgtggccacatatcgccaggtggatggcgtgacgaagaacaagatg
gtggagatgttacggctgtggcggacgggtgccggcgggggtgagctttatccggtcgga
gtgcgagagcaagtcgagcgcgatcttttcggctctacgggtctgcctccaccccctcag
atggcgccgcctcccctcacgcaggccaacgtccaggcagagttgcgtcagttcctgcag
cagaaggaggatgagatggccaaagagttttcgacgggtcttgccaagacagtcaacgtc
ctggtccagatcgacaagctcctgtccaccacacaggtgaaccgggatgagctcctcggc
atcaagcagcagattggcgcgatgaagggcggtcaccagcccgcgtctggccagctcagc
cgtcagcaggccgtgcccgcggctcggcctcctgtgccggccttccaaccccgcgaaact
ttccctcctcagcagcgcccgccgttccctcagtatatccagccgccacagcgcttcgcg
acgccgccgcaggtccctacaccgccacagatccatgccccgctcccaacgccggtcacg
ctaccgaagctgggcgccctcccccttccgtccaatgtcgctgacatcctcgccaacctc
tccaagtcgggcgttttatcgcagcccatcacccccgagccaatcaacaagcgatctggc
cttgaggcgtacgaggacatgatcctggctctcaacatgactgttgacgtgttcgacctg
accaagctgtcgctcccggtctcccacctcccggtcagatgcaagcagtgcggcgagcgt
ttccccgagggcgagaacactctgcaagcgcatatggactggcacttccgccgcaaccgc
aaggagcgcgagacggagggtcgcggcgcgcaccgtcgctggctccctcgtgcagataaa
tggatccacgagaatagcgaggcggggccaagcgagcccaagcccgagactgttacgagc
accaaactcaccgccgaacgactcgctgccctcaagcgcaagtgggtccgcgcgccggcc
gaccccgcaaaggcaactccttgcccgatctgcaaggaacagttcaagccagagtggtcc
gaggacgaggaggagtgggtgttcaacaacgccgtcaacgtgcatgggacgatcttccac
gccacgtgccgtgctgagaagatgagcagcgctgttgcagcgcggctacttggcaccgag
cgcggtgtgtctagaagccccgcacccgagagcgttcctggctcgccgaggcaacgcttg
tccgcatcgccagcgaaatcacctgcccgtctcccaccttcgccgaccgccaagcgcaag
gcagcggatgacggcacggaggaggccaagcgtgtcaagctcgaaccagggacagaagag
ggggccgcatag
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