Cutaneotrichosporon cavernicola: CcaHIS019_0408670
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Entry
CcaHIS019_0408670 CDS
T09540
Symbol
CcaverHIS019_0408670
Name
(RefSeq) uncharacterized protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03022
Basal transcription factors
ccac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CcaHIS019_0408670 (CcaverHIS019_0408670)
09124 Replication and repair
03420 Nucleotide excision repair
CcaHIS019_0408670 (CcaverHIS019_0408670)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0408670 (CcaverHIS019_0408670)
03400 DNA repair and recombination proteins [BR:
ccac03400
]
CcaHIS019_0408670 (CcaverHIS019_0408670)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CcaHIS019_0408670 (CcaverHIS019_0408670)
DNA repair and recombination proteins [BR:
ccac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CcaHIS019_0408670 (CcaverHIS019_0408670)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
85495917
NCBI-ProteinID:
XP_060457312
LinkDB
All DBs
Position
4:join(2238513..2238751,2238784..2239013,2239048..2239732,2239766..2239835,2239872..2239981,2240021..2240063)
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AA seq
458 aa
AA seq
DB search
MATDDLYNPGNSPRSEIDSDDDLDRVGPSRRNRNQKSKAKQNVNAWEGTYKRSWDQVQED
ETGGLQSTVESLLARGRRKRALQSEAPLRRSLVRHMFIVVDLSESMRDMDFRPDRFQLTL
QYLRSFVVEWFDQNPLGQVGVILLRDRLAEMLVPMGGNPQDIVAALADKRKLEPSGEASL
QNGLVMARGGMSHLPSTSSLETLVIFSAISTADPDGPINIHQVLDELVQARIRTTVISLS
AEIKICKQIAERTGGRFGVAIDEEHYKDLLWETIPPPAQTIAPVTMGVRDALARGGRAAP
GGQTRPPPAGDLMVMGFPTRLPPAGESFCACHGLLRRGGYMCPRCGVKLCDVPTDCEVCG
LMVVSSPHLARSFWLLFPVAAYKTLPIDGLEELKLDQSCFGCNEPFPSMSSVADAPPPAD
HTLSPTGRYRCAKCEHDFCIDCDMYVHETLHTCPGCSQ
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacgacctgtacaatccgggcaactcgccacggtccgagatcgactctgac
gatgacctcgatcgcgtcggcccttcgcgtcgcaaccgtaaccagaagtccaaggccaag
cagaacgtcaacgcatgggagggaacgtataaacgctcttgggaccaggtgcaggaggac
gagacgggtggacttcaatcgaccgtcgagagcctcctggcgcggggaaggcggaagcgc
gctctccagtccgaggcaccgctacgccgatcactggtgcgacacatgttcatcgtggtg
gacctgtccgagagcatgcgtgacatggatttccgaccagaccgcttccagttgacgctg
cagtatctgcggtcgttcgtggtcgagtggtttgaccagaatccactgggccaggtcggt
gtcatcctcctccgcgatcggctggcggagatgctcgtgccaatgggaggaaatccgcag
gacattgtggcagcgctggcggataagcgcaaactcgagccgagtggcgaggcgtcgttg
cagaacggtctcgtgatggctcgcggcgggatgagccaccttccctcgacctcatcgctt
gaaaccctcgtcatcttcagtgcaatctctaccgccgaccccgacggacctatcaacatt
caccaggttctcgatgagctggtacaggcgcgcatccggacgacggtcatttctctgtcg
gccgaaatcaagatctgcaagcagatcgcggagcggacgggcggccgcttcggcgttgcc
atcgatgaggaacactacaaggatttgctgtgggagactattccgccgccggcccaaaca
atcgcgcccgtgactatgggtgtgcgcgacgcattagctcgcggcggacgggccgcaccg
ggcggccaaactcgaccaccacccgctggcgatctcatggtcatgggattcccgacccgc
ctccctcccgcgggtgagagcttctgcgcttgtcatggcctcctcaggcgtggaggttac
atgtgtccccgctgcggggtcaagctgtgcgatgtgcccaccgactgcgaggtgtgtggg
cttatggtcgtcagcagcccacaccttgctcgaagcttctggttactcttccccgttgcc
gcgtacaagactctacccattgacggattggaagaactcaagctcgaccaatcttgcttc
ggctgcaatgagccgttcccatcgatgtcgtctgtcgccgatgcaccaccaccagccgac
cacacattgagccccaccgggcgctaccgctgtgccaagtgcgagcacgacttctgcata
gactgcgacatgtacgtgcacgagacgctacatacgtgccccggctgctcgcagtaa
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