Cutaneotrichosporon cavernicola: CcaHIS019_0409160
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Entry
CcaHIS019_0409160 CDS
T09540
Symbol
SPT5, CcaverHIS019_0409160
Name
(RefSeq) uncharacterized protein
KO
K15172
transcription elongation factor SPT5
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CcaHIS019_0409160 (SPT5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0409160 (SPT5)
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0409160 (SPT5)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CcaHIS019_0409160 (SPT5)
RNA polymerase I system
CcaHIS019_0409160 (SPT5)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CcaHIS019_0409160 (SPT5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW2_Spt5
Spt5-NGN
Spt5_N
KOW1_SPT5
KOW5_SPT5
KOWx_SPT5
KOW
CTD
PCB_OB
Motif
Other DBs
NCBI-GeneID:
85495966
NCBI-ProteinID:
XP_060457361
UniProt:
A0AA48L517
LinkDB
All DBs
Position
4:join(2371241..2371318,2371375..2371396,2371451..2371461,2371496..2371642,2371675..2374881)
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AA seq
1154 aa
AA seq
DB search
MSDDEERYTSEVGSDDEIEVQRPKKRARIADPDEESEDEMEPVPMHQHQGGGDDEGGDDD
DDDEEDEDDEDDEEDEDDEEAAPRKKHRTHRKPANRFLDVEAVVDDDEEEEDEDDDYGDV
REFIEESEIGATDDIHHRTLNRNLHRQEDDNVEEMVAALKERHRRQARYNADSDQVPQRL
LMPGVNDPSLWQIRVKPGRERNITVSIFRKVFEAKQKGGDIDVSSAFYRDSLPGLMFLEA
RTSSAVHDAVNGIVGVYLSRGIQLIPIEEMAPLLRIKKKEINLQPGMWVRLKRSKYTGDL
AQVIDVDQITSGVVGVKFIPRIDLTPREGRDRNAKGLGGTLRPPQRLFNYDDVKRVYGRG
NVRSSGGSYGFDGEEYIDGFCVKDIKIDFLATEGVQPTLEEVSKFAGDDSGTGKLDLSTI
ADANRNVSAGVLSPGDQVEVYEGELAGMYGTVETISGDTISIRAIGGAIHDQVVEVPASS
VRKKFDVGEHVRIMAGKNADVAGMIVDVKGDVVTILSNQNREEIRAFSKDVRKAADVSST
ATATLSRFEVHDLVMLDSTTAAVVTKIEGKNLRIVDQNGLGRLVGTNEVTLRRDNARFAV
ATDSTGNEMKVGDAMKEVDGENRRGEVINISRSLFVFLHNREYAENNGVFVARSTALVSV
TPKSVSADLTKMNPALNAQLPLGGASLMPPPPSVGNRKIINTPVVVTRGSSKGLLGTIKD
VVGADKARVELQTSNKIITVSTAWLKRKDPRSGVTYPLESGGGGGGGGGYGGGGGGGGGY
DVGPYGAMNGGRTPAPGGQFGRTPNPYAMGMGKTPNPYAAGGKTPGGAWGAGGKTPAPGF
GGAGGKTPSWAGSGGKTPGWSGAGAGGRTPAPGYGAAGGRTPAPGYGAAGGRTPAPGYGG
GGKTPNPYSSAPTPGVYHDAGPAKPVSAPTPWSGPSSYSAPTPGAALSAPTPAPAFSAPT
PYSAPTPGAGLSAPTPGAALSAPTPGYGLSAPTPGGMGGPTPFGAPTPYVSGGGAMPEMD
QGRGWDWALDFRNVLVRVGPSQHADTRNPRHFQRGAYDDAILGIDDAVGNNLRCYVVSGA
EESEPVEIAPEYLIPVRPDGSGQTVIAIAGDHRGTQRRTQYKNDDVWLLDQDASDVVPLL
IEEVDLARIWREYE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaagagcggtacacctcggaggtggggtctgacgacgaaatcgaggtc
cagcgccccaagaagcgtgcgcgcattgctgacccggacgaggagagcgaggatgaaatg
gagcctgtccccatgcaccagcaccaaggaggaggagacgatgagggtggcgatgatgac
gatgatgacgaggaggacgaggatgacgaggacgatgaagaggacgaggatgacgaggag
gcggccccacgcaagaagcatcgcacacaccgcaagccagccaaccgcttcctcgatgtc
gaggccgttgtcgacgacgacgaagaggaggaagacgaggatgacgactacggagatgtc
cgcgagttcatcgaggagtctgagatcggagccaccgacgacatccaccaccgcacgctg
aaccgcaacctccaccgccaggaggacgataatgttgaagagatggttgccgcgctcaag
gaacgccaccgccgccaggctcggtacaacgcagacagcgaccaggtgccgcagcgcctc
cttatgcctggcgtcaacgacccaagcctctggcagatccgcgtcaagcccggacgcgag
cgcaacatcacggtatccatcttccgcaaggtgttcgaggccaagcagaagggcggcgac
attgacgtgtcctcggcgttctaccgtgactccctccccggtctcatgtttctcgaggcg
cgcacctcgtcggctgtgcacgacgccgtcaacggcatcgtgggcgtgtacctttcgcgt
ggtatccagcttatcccaatcgaggagatggcgccgcttcttcgaatcaagaagaaggag
atcaacctccagcccggcatgtgggtccgcctgaagcgcagcaagtacactggcgatctc
gcccaggttattgatgtcgaccagatcacgagtggcgtcgtcggcgtcaagtttattccc
cgtatcgaccttacgcctagggaaggccgcgaccgcaacgccaagggcctcggtggcacg
ctgcgtccacctcagcgcctcttcaactacgacgacgtgaagcgcgtttacggccgtggt
aacgtccgatcgagtggtggctcttatggtttcgatggagaggagtacattgacggcttc
tgcgtcaaagacatcaagatcgacttcctcgccacggagggagtgcaaccaacgctcgag
gaggtgtccaagtttgcaggggacgattcgggcacgggtaagctcgacctctccaccatt
gccgacgcaaatcgcaacgtctctgcgggtgtcctctcccctggcgaccaggttgaggtg
tacgagggcgaactggctggaatgtacggtactgtcgagaccatttccggcgacaccatt
tcgatccgtgctatcggtggtgccatccacgaccaggtcgtcgaggtgcccgcgtccagt
gtgcgcaaaaagttcgacgttggtgagcatgtcaggatcatggctggcaagaacgcggac
gtcgcgggtatgattgtcgacgtgaagggtgacgtcgttaccatcctttccaaccagaac
cgcgaggagatccgcgcgttctcgaaggacgtgcgcaaagcggcggatgttagttcgacg
gcgactgcgacgctcagccgctttgaggtacacgaccttgttatgctggactcaacaact
gcagccgttgtgaccaagattgagggcaagaacctccgtattgtcgaccagaacggcctc
ggccgcctcgtgggcaccaacgaggtgacgttgcgtcgcgacaacgcccgctttgccgtc
gcgacagactcgactggcaacgaaatgaaggtcggcgacgcaatgaaggaggtcgacggt
gagaaccgccgcggtgaggtcatcaacatctcgcgctccctcttcgtcttcctccacaac
cgcgagtacgcagagaacaacggtgtctttgtcgcgcgttcgacagcgctcgtttccgtg
acgcccaagtcggtctcggccgacttgacgaagatgaaccctgcgctcaatgctcagctt
cctcttggcggtgcgagtctcatgcctccaccgcccagcgttggtaaccgcaagatcatc
aacacgccagtcgtcgtcacacgtgggtcctctaaaggtctgctgggcacgatcaaggac
gtggtcggggcggacaaggcgcgtgtcgagttgcagacaagcaacaagatcatcacagtg
tcgacagcgtggctcaagcggaaggacccgaggtcgggagtcacctacccgctagagtct
ggtggtggcggtggcggcggcggcggctacggcggcggtggtggtggtggtggtggttac
gatgttggaccgtacggcgcaatgaacggcggtcgcactcccgcaccaggcgggcagttt
gggcggacgccgaatccctacgcaatgggcatgggcaagacccccaacccgtatgctgcg
ggtggtaagactcctggcggtgcgtggggcgctggtggcaagacgccggcgcctgggttc
ggcggcgcgggcgggaagactcctagttgggctggtagcggcggcaaaacccctggctgg
tccggcgcaggtgctggtggccgcacacctgctcctgggtacggcgctgctggcggtcgc
actcctgcgcctgggtacggcgctgctggcggtcgcacacctgcgcctgggtatggcgga
ggtgggaagacgcccaacccatacagttcggcacccacacctggtgtctaccacgacgca
ggcccggccaagcccgtgtctgctcctactccctggtctggaccctcttcgtactcagca
cccaccccaggcgccgctctctccgctcccacacctgcccctgcgttcagcgcgcccacg
ccgtactctgccccaacgcccggtgccgggttatcggctcccacacctggcgcggcgctc
tcagccccgactccaggatacggcctgtctgcaccaacaccaggcggcatgggcggcccg
acacccttcggtgcgcccactccttacgtgagcggcggcggtgcgatgcccgaaatggac
caaggcaggggttgggactgggccctcgacttccgcaacgtcctggtacgtgtcggtcct
tcccagcacgccgacacacgcaaccctcgtcacttccagcgtggcgcgtacgacgacgcg
attctgggcatcgacgacgctgtgggcaacaacttgcgctgctacgttgtgagtggcgcc
gaggagagcgagccggtcgagattgctcccgagtacctgatccccgtccggccggacggg
tcggggcagactgtcattgcgattgcgggtgaccaccgcgggacccagcgacgcacgcag
tacaagaacgacgatgtctggcttctcgaccaggatgcgagtgacgtcgtgccgctcctc
attgaggaggtggacttggcgcgtatctggcgggaatacgagtag
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integrated database retrieval system
