Cutaneotrichosporon cavernicola: CcaHIS019_0501180
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Entry
CcaHIS019_0501180 CDS
T09540
Symbol
CcaverHIS019_0501180
Name
(RefSeq) uncharacterized protein
KO
K12589
exosome complex component RRP42
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0501180 (CcaverHIS019_0501180)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0501180 (CcaverHIS019_0501180)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CcaHIS019_0501180 (CcaverHIS019_0501180)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CcaHIS019_0501180 (CcaverHIS019_0501180)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6162
Motif
Other DBs
NCBI-GeneID:
85496360
NCBI-ProteinID:
XP_060457755
UniProt:
A0AA48QWL2
LinkDB
All DBs
Position
5:join(267632..267894,267978..268566,268602..268658)
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AA seq
302 aa
AA seq
DB search
MASLSPAERDYIISGLLSDPALRVDGRSLLSPRPIETEYGVMPAANGSARVRVGGTEAVA
GIKLDVGEVSKGSFEGGPGWRAKVEVDITPQALPSTDPKTLQTLSASYAALLAEHFVPSV
SPLKITETRAFIPSLHIALLSCDGAIASALTLAARGAFADLQVPVTKVVGMEEEDAETQA
DLAGIKGAIAAGRAGKGKGRARARGGDDWDIEGDSAPLEGREELPVLVTLNLVGEKEFVD
ASLREEAACPARVHVFVRPGGRIAGIRMEGDGGIATERIRPLLEEARRIGLELAEALNAD
LP
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggcatccctctcccctgctgagcgggactacatcatctccggcctactctccgacccg
gcgctgcgtgtcgacggccgcagtctcctctcaccccgccccatcgagacggaatatggc
gtgatgccagccgcgaatgggagtgcgcgcgtgcgtgttggcggcacagaggctgttgcc
gggatcaagctcgatgtcggcgaggtgtccaagggctcttttgaggggggtccgggatgg
agggcaaaggtcgaggtggatatcacaccacaagcccttccctccacagacccaaagacg
ttgcaaaccctctcggcatcctacgccgccctcctcgcggaacacttcgtaccctccgtc
tctcctctcaagatcaccgagacgcgtgccttcatcccctccctccatattgcgctgctc
tcatgcgacggcgccatcgcttctgcactaacccttgctgcgcgcggtgcttttgccgac
ctccaagttcccgttaccaaggtggtgggcatggaggaggaggacgccgagacgcaagcg
gatttggcggggatcaagggcgcaatcgccgctggacgggcggggaagggtaaaggccgc
gctcgggctcgtggtggtgacgactgggatattgaaggggactctgcgccgctcgaggga
agggaggagttgcccgtcctagttacgcttaatctcgttggggagaaggaattcgttgac
gcctctctgcgcgaggaggctgcgtgtcccgcgcgcgtgcatgttttcgtgcgaccgggc
gggcggatagcgggtatccggatggaaggtgatggtgggatcgcgacggagcgtatccgg
ccgctcctggaggaagcacgccggatcggcctcgagctcgccgaggcgctcaacgccgac
ctaccatag
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