Cutaneotrichosporon cavernicola: CcaHIS019_0505630
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Entry
CcaHIS019_0505630 CDS
T09540
Symbol
RRP6, CcaverHIS019_0505630
Name
(RefSeq) uncharacterized protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0505630 (RRP6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0505630 (RRP6)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CcaHIS019_0505630 (RRP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
85496805
NCBI-ProteinID:
XP_060458200
UniProt:
A0AA48L6Q4
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All DBs
Position
5:join(1388333..1388782,1388816..1389996,1390030..1391111,1391157..1391242)
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AA seq
932 aa
AA seq
DB search
MAPKEETQANASGTYIPSEFAAFVETMTKALEAGTSHAAQFPDKSDLMFHRTLDRKFAKG
LDASGERVLKLADSILQLTVDGQPKSNNATRIKPRRKLADEDDVVDSFQSTVVDHVDALL
EDADTYIDDASGARKKAAIDVKPNAHVMKNLPGPARGGVLAHNLRMNHGIEKPQLLFSDP
VDNSPDRPMWMPTLPEKLHAMVPMDFIAASDEDEPFVDDGTPSARARYQRRVKARQHPYY
FETRHLPYPTSMFMEREPAMPKSFEDTPFEFVDTPERLAALTEVLLQAKEIAVDLEHHNT
RSYYGFTCLMQISTREQDWVVDTLALRSELREHKLGGVMADPSVIKVFHGADSDIVWLQQ
DFDIYVVNLFDTFHAAKTLDFPKMSLGSLLELYCDFQADKKYQLADWRIRPLPKEMLFYA
RADTHFLLYVYDRLRNALIARSSRTPSPAVEGADGPDGASGTSTPKPNPQTGIRRVLDLS
AETALRLYSRETYNAETGAGVLGWQNMARKLGKKDAIKQKPGYVLKRLHRWRDDLARELD
ESPHYVLPAHTVIHLAQSPPSRPEVLSRVLGKHAPNLLPRADEILGVIAAGVLDFHLALK
DSPNEAQPVPCVEDIQPLPAGKHPILQKHSGSTRLSTAATEFKPATPQAPAPKRLKPHTT
VDVWANLTGGKKPVAAKQKPVSALFGKTLQTTASPLPAATSTSASSSLFGHTLAPKTSSA
STSRQQSPGFASVQSMIHSGLEKAPVEVSTIESAAFNQATEPETVAFVPAGERKIPKAEP
TSTSASIGKGKGKAVTVTDDAVPTEAAPKAGPTVDSDGVVDVRKKNRRKDKVKAASLSAP
ESAEGSPAPVKKSKKKIKATDIPAFDYAAEGNLLDEPAPSSEFKASRKTKKKDKPKDKPK
AKKEASSTSANRRPLSNHSEPKSGNKSGTFMS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaggaggagacccaggccaatgcgtcggggacatacataccgtccgagttt
gcggcgttcgtcgagacgatgacaaaagcgctcgaggctgggacttcccacgccgcgcag
ttcccagacaagtcggacttgatgttccaccgcactctggaccgcaagtttgccaaggga
ctcgacgcgtctggcgagcgtgttctcaagctcgctgatagtatccttcagctcaccgtc
gacggtcaaccgaaatccaacaacgcgacgcgcatcaagcctcggcgcaagctggctgat
gaggacgacgtggttgacagcttccagtcgacggtcgttgaccacgtcgacgccctactc
gaagacgcggacacgtacatcgacgacgccagcggggcgcggaagaaagcggcgatcgac
gtcaagcccaacgcccacgtgatgaagaacctacccggtccggcccgtggcggcgtgctc
gcccacaacctgcgcatgaaccatggcattgagaagcctcagctcttgttttcggatccc
gttgacaactcacccgatcgcccgatgtggatgccgactctcccggagaagctgcacgcc
atggtacccatggacttcatcgcggcatctgacgaggacgagcctttcgtcgacgacggt
acgcccagtgcgcgcgcccgttaccagaggcgcgttaaggcccgtcagcatccgtattac
tttgagactcgccatctcccctacccgacctcgatgttcatggagcgcgaaccagccatg
cccaagtcgttcgaagatacgcccttcgagtttgtcgacacgcctgaacgcctcgcggca
ctcacggaggttcttcttcaagccaaggagattgcagtcgatcttgagcaccacaacact
cgctcgtattacggtttcacctgcctgatgcagattagcacccgcgagcaggactgggtt
gtggacacccttgccttacgttccgagctccgagagcacaagctgggtggtgtcatggct
gacccctccgtcatcaaggtgttccacggcgctgactcggacattgtctggctccagcag
gactttgacatctacgttgtcaacctgttcgacactttccatgccgccaagacgctcgac
ttccccaaaatgtcgctcggcagcctcctcgagctctattgcgacttccaggccgacaaa
aagtaccaactggctgactggcgcattcgcccgttgccgaaagagatgctgttttacgcg
cgcgccgatacccacttcctcctctatgtctacgaccgcctccgcaacgcgctcatcgcg
cgctcgtcacgaacaccgtcgcctgcggtcgagggtgcagacggaccagatggggctagc
ggaacatccactcccaaacctaacccccagacaggcatccggcgcgtcctcgacctctct
gcagagactgccctcaggctctatagccgagaaacctacaatgcagagacgggcgctgga
gtgcttgggtggcagaacatggcgaggaagctcggcaagaaggacgcgatcaagcagaag
cctggatacgtcttgaagcgccttcaccgctggcgtgacgacctcgcgcgtgagcttgat
gaaagccctcactatgtcctccctgcccacaccgtcatacatcttgctcagtcgccacca
tcccggccagaggtgctgtctcgtgttctcggcaagcacgctcccaacctcctgccccgt
gctgacgagatccttggcgtcattgcggctggtgttctggatttccatctcgcattaaag
gactcgcccaacgaggcccagcctgtgccttgtgtcgaagacatccagcctctgcctgca
ggcaagcacccgatcctgcagaagcactcgggttccactcgtctctcgacggcggctacc
gagttcaagcccgcaactccacaagcgcctgcacccaagcgactgaagccccacaccacc
gtcgacgtctgggctaacctcacgggaggcaagaagccagttgccgcgaagcagaaaccg
gtgtcagctctgttcggcaagacgcttcagacgacggcatctccgctaccggctgccaca
tccacttcagcgtcgtcttcgctttttgggcataccctcgcacccaagacatcctcggcg
agtaccagccgccaacagtcacctgggtttgcctctgtgcagtctatgatccattccggt
ctggaaaaggcaccggtcgaggtttccacaatcgaatccgcggcgttcaaccaagctact
gaacccgaaacggtcgcgtttgtgccggcgggagaacggaaaattcccaaggccgaaccg
acctccacctcggcttccattggcaaaggtaagggcaaggctgtaacagtcacggatgat
gctgttcccacagaggcagcgccaaaagctggtcctactgttgattcggacggagtagtt
gatgtgcgcaagaagaatcgcaggaaggacaaggtcaaggcggcgtccttgtctgcccct
gaatcagccgagggttcccctgcacctgtgaagaagtcgaagaagaagatcaaggcgacc
gatatccctgcctttgattacgctgccgagggcaacctgctggacgagccagctccatcg
tccgagttcaaggcttcgaggaagacgaagaagaaggacaagcccaaggacaagcctaag
gctaagaaggaggcgtcatccacctcggctaatcgtcggcctctttcgaatcacagcgag
ccaaagagcggcaacaagtctggcacatttatgagttga
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