KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0506370
Entry
CcaHIS019_0506370 CDS       T09540                                 
Symbol
NMD2, CcaverHIS019_0506370
Name
(RefSeq) uncharacterized protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03013  Nucleocytoplasmic transport
ccac03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CcaHIS019_0506370 (NMD2)
   03015 mRNA surveillance pathway
    CcaHIS019_0506370 (NMD2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccac03019]
    CcaHIS019_0506370 (NMD2)
Messenger RNA biogenesis [BR:ccac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CcaHIS019_0506370 (NMD2)
   mRNA cycle factors
    P-body specific factors
     CcaHIS019_0506370 (NMD2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 85496879
NCBI-ProteinID: XP_060458274
UniProt: A0AA48L6R8
LinkDB
Position
5:complement(join(1569976..1570173,1570209..1570570,1570604..1570787,1570828..1570985,1571022..1571151,1571189..1571500,1571536..1571616,1571650..1571832,1571867..1572046,1572085..1572828,1572875..1573099,1573134..1573388,1573420..1573622,1573656..1573743))
AA seq 1100 aa
MSAQDYVAKYPRRRELLKTVDTYWIDDPYRPPGQLDSSLKKHTTLINRLKAALLIGPVDA
IIKEIDGLVLSKYTAEIVAAVVDGASRGRGDPEVAVEIIVYLHKRLAPEFLPQLLPPLLT
ILAPAPPPAKDASEKDREKEDKERISRQRPVLRIVSELAMLMAWPEGALKGAAEVGKVLK
SLMTSDPQYTNIPLMSTFLKHFSRAYLGSVPPTDGAAPEALPDGVEELIPAEVQRQMREL
FTKYFDTASKTLVKGQLDKRNHEAYIKSGEIFEDRQHAYERMTRAVERLTTGVQGLADLL
GLDSPVLPTAASLGKSGLQIVNTTSSFTVREDGVVPGGIWDDDEERRFYEDLPDLLDLVP
ASLLGVKGKKSEKDEGEKEKAPEEATDADAEADAQAQLREEEDLRRQIEQMVLEGASSEE
ETVHMDRNDTAFSEESGPAEHEAHEEEPQPAADGAGDEELQSGPAARLTALFAALPEAVN
REMIDKLAIEFAFLNSKAARRRLIKFIGAVPKSRTDLLPHYGRFVAIIDKYMPDVGKGII
ETLDEEMRYLQRKRTVRELDSVRLKNVRFYGELAKFKVARPYTILHVLKVFVDNFKFNVE
NIANLLETCGRFLLRSEGTSETAKSMIELMRRKQSVTHLDQRLNIMLENAFYQCNPPERV
AREVVELPPMQLYIQHLLYNVLTKRAQEKVLLLMRKMHWEDPETADFLLRTFTEVWEVKF
ENIGRIAGIVYDLQRYHVDFSVAVVDQVMEDIRIGMEENIFKFNQRRIASAKFLAELYMY
RVVNAAVIFEVLWQLLSFGHPEGFPVPGRDSPIDSVEDFFRVRLAGVILDTCGSCFAKGS
LRRRLDHYLVVLQLYAVCKAEMPMDVDFMLDDLLETLRPKGRPKGVKDGLVVNRLRNFGE
AAQALDAMLAANATDHDDDDDEDEGERASEPGIERIDDTDDEEETPSPDVDDEDDDDVVL
IRDQPKELDEFDERAQDEFDRDFARMLADTTVERKAAPPVFDQAVPMFRKRQQNGESDAS
KMQFMLLSKKGNKPQVRSVDIPIDSSIASNVRTHQAASRAEQEQLKRLVLQNEKRLENED
LVNIEQSMARRGIKVRITNS
NT seq 3303 nt   +upstreamnt  +downstreamnt
atgtctgctcaagactatgtcgcaaaataccctcgcaggcgcgagctcctcaagacagtc
gacacttactggatagacgacccataccggccgcctggacaactcgactcgtcgctcaag
aagcacacgactttaatcaatcgcctcaaggccgcactgcttattggtcccgttgatgcc
attatcaaggagattgatggccttgtgctgtccaagtatacggccgagatagtcgcggct
gtcgtcgacggcgcgagccgcggacgcggcgaccccgaggtcgctgtcgagatcattgtg
tacttgcacaaacgactcgctcctgagtttctcccccagctgcttcccccgctgttgacc
atcctcgcacccgcacctccaccagccaaagacgcgtctgagaaggaccgcgagaaggag
gacaaggagcgtatctcgcgccagcgccccgtcctccgtatcgtgtctgagctggccatg
ctcatggcctggcctgagggcgcgctcaagggcgcggccgaggtcggcaaggttctcaag
tcactcatgacgagtgacccccagtacaccaacatccccctcatgtctaccttccttaag
cacttcagccgagcgtacctcggttcggtcccacctacggacggtgccgcacccgaagcg
cttcctgacggtgtcgaggagctcatccccgccgaggtccagagacagatgcgcgaactc
tttactaaatactttgacacggccagcaagacgctcgtcaagggtcagctcgacaagcgc
aaccacgaggcgtacatcaagtcgggcgagatcttcgaggaccgccagcacgcgtacgag
cgcatgacgcgggccgtcgagcgcctcaccaccggtgttcagggcctcgctgacctcctc
ggccttgattcacctgtcctcccaaccgccgcgtcgctgggcaagtcaggcctccagatc
gtcaacaccacgtcatcgtttactgtgcgcgaggatggcgtcgtgcctgggggaatttgg
gacgacgatgaggagcgtcgcttctacgaggacctcccagacctcctcgaccttgttcct
gcgtccttactcggcgtaaagggcaagaagtccgagaaggatgagggcgagaaggaaaag
gcgcccgaggaggcgactgacgctgacgctgaagccgacgcccaagcccagctgcgcgaa
gaggaagacctccgtcgccagattgaacagatggtgcttgagggcgcttcgagtgaggag
gagactgttcatatggaccggaacgacaccgccttctcggaagagtctggtccagcagag
cacgaagcccacgaggaggagccgcaacccgctgctgacggcgccggggacgaagagctt
cagtcaggcccggctgcgcgtcttactgcgctcttcgctgctcttccggaggcggtcaac
cgcgagatgatcgacaagctcgcaatcgagtttgcgttcctcaactcgaaggccgcgcgt
cggcggcttatcaagttcatcggcgctgttccaaagagccgcaccgatcttcttccacac
tatggccgcttcgttgccatcatcgacaagtacatgcctgacgttggcaagggtatcatc
gagaccctggacgaggagatgcgctacctccagcgcaagcggacggtacgcgagctcgac
agcgtccggttgaagaacgtccgcttctacggcgagctggccaagttcaaggtggcgcgt
ccgtacaccattctccacgtcctgaaggtgtttgtcgacaacttcaagttcaacgtcgag
aatattgccaacctgctggagacgtgtggccgattcctcctccgttccgagggaacgtct
gagacggccaagagcatgatcgagttgatgcgccgcaagcagagcgtcacccaccttgac
cagcgcctgaacatcatgcttgagaacgccttctaccagtgcaacccaccagaacgcgtc
gcacgtgaggttgtcgaactgccgcccatgcagctctacatccagcacctcctgtacaac
gtgctgacgaaacgcgcacaggaaaaagtgctcctcctcatgcgtaagatgcactgggag
gacccagagaccgcagactttcttctccggacattcacagaggtgtgggaggttaagttt
gagaacattggtaggatagcggggattgtgtacgaccttcagcgataccacgtcgacttc
tccgtcgcggtcgtggaccaggtcatggaagacatccgaatcggcatggaggagaacatc
ttcaagttcaaccagcgccgtatcgcgagtgccaagttcctcgcggagctgtatatgtac
cgcgtcgtcaacgcggcggtcatctttgaggtgctctggcagctgctgtcgtttggacac
cctgagggcttccctgtcccagggcgcgacagccccatcgactccgtagaggacttcttc
cgcgtgcgcttagcaggtgtgatcctcgacacgtgtggtagctgtttcgccaagggctcc
ttgcggcggagacttgaccattaccttgtcgtccttcagctctatgccgtctgcaaggcg
gagatgccgatggatgtcgacttcatgctcgacgacctgctcgagactctgcgtcccaaa
ggccgtcccaagggggtcaaagacggacttgtggtcaaccgcctgcgaaactttggagag
gcggcccaggccctcgatgcaatgctggcggctaacgccactgaccacgacgacgacgat
gacgaggatgaaggggagcgcgcaagcgagcctggcattgagcgcattgacgacacggac
gacgaagaagagacgccgtcgcccgacgtcgacgatgaggacgatgacgacgtcgtgctg
atacgtgaccagcctaaagagctcgacgagtttgacgagcgcgcgcaggacgagttcgac
cgtgactttgcgcgcatgttggctgacacgacggttgagcgcaaggctgcgccgcccgtg
ttcgaccaggctgtgcctatgttccgcaagcgacagcagaacggcgagtcagacgcgagt
aagatgcagttcatgctgctgtccaagaagggcaacaagccgcaggtgcgctcggtggac
attccgatagactcgtcgatcgcgagcaacgtgcgcacgcaccaggcggcgtcgcgggcg
gagcaggagcagctgaagcgtctcgtgctgcagaacgagaagcgactcgagaacgaggac
ctcgtcaacatcgagcagagcatggcgcgccgcggcatcaaggtccggattacaaactcg
tag

DBGET integrated database retrieval system