Cutaneotrichosporon cavernicola: CcaHIS019_0510540
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Entry
CcaHIS019_0510540 CDS
T09540
Symbol
ded1, CcaverHIS019_0510540
Name
(RefSeq) uncharacterized protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ccac
Cutaneotrichosporon cavernicola
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0510540 (ded1)
03041 Spliceosome [BR:
ccac03041
]
CcaHIS019_0510540 (ded1)
03036 Chromosome and associated proteins [BR:
ccac03036
]
CcaHIS019_0510540 (ded1)
Enzymes [BR:
ccac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CcaHIS019_0510540 (ded1)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CcaHIS019_0510540 (ded1)
mRNA cycle factors
Common to processing body (P body) and stress granule
CcaHIS019_0510540 (ded1)
Spliceosome [BR:
ccac03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CcaHIS019_0510540 (ded1)
Chromosome and associated proteins [BR:
ccac03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CcaHIS019_0510540 (ded1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
85497296
NCBI-ProteinID:
XP_060458691
LinkDB
All DBs
Position
5:complement(join(2664232..2665755,2665849..2666297,2666417..2666453))
Genome browser
AA seq
669 aa
AA seq
DB search
MTATVNDIEQKLSGVSIGNQSNGGARPAYVPPYLRARKAAEAVNPTAAPKQFNGAAPTPT
PAGNGYRPSPTGLPTPAPTPVPQGSYVPLNQRNNAGGDRQDGGGWGGPAPRGPPGGGGSG
GRFDRSLPPGVGAWRDGKHTLGSQNPRLEKELYGEEGDGTHQSTGINFDKYADIPVEATG
SGVPDPVTEFLSPIDPVLLENIKLARYTTPTPVQKYSIPIVGLGRDLMACAQTGSGKTGG
FLFPILSSLFTYGPSPPPADNSYSSYSRRKAYPTALILAPTRELVSQIHEEARKFAYRSW
VRPAVVYGGADIGQQIRQLDRGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLD
MGFEPQIRRIVEGEDMPGVQDRQTLMFSATFPKEIQVLARSFLKDYIFLSVGRVGSTSEN
ITQRIEYVDEHDKRSLLLDLLLAEQSGGLVLVFVETKRMADSLCDFLCSQRHNATSIHGD
RTQREREAALHAFRTGRAPILVATAVAARGLDIPNVTHVILYDLPTDVAEYTHRIGRTGR
AGNTGTSTAFFNRNNLAIGRDLIDLLTEANQEVPQWLVDISQERSFGGGGYGRRGGGGRG
GGGRAGGRDARTGFGGGGYGGGGGGGGFGGRGGGYGGGYGGGGGGGYGGGYGGGSGFPPA
SGSSGASWW
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctactgtcaacgacatcgagcagaagctctctggcgtctccattggtaaccag
tccaacggcggcgctcgtccggcttacgttcctccctatctccgcgctcgcaaggctgcc
gaggctgtgaaccctaccgctgcgcccaagcagttcaacggcgccgcgcccaccccgacc
cctgctggcaacggctaccgcccgtcgcctactggtcttcccacccctgcgccgactccc
gtcccgcagggctcctacgttccgcttaaccagcgtaacaacgctggtggcgaccgccag
gacggcggcggctggggcggccctgctccccgtggccctcccggtggcggcggcagtggc
ggccgcttcgaccgcagcctccctcccggtgtcggcgcttggcgcgacggcaagcacact
ctcggctcgcagaacccccgtctcgagaaggagctttatggcgaggagggtgatggtact
caccaatcgaccggcattaactttgacaagtatgccgacatccccgttgaggctaccggc
tcgggcgtccccgaccctgtgaccgagttcctgtcgcccatcgaccctgtcctgcttgag
aacatcaagcttgctcgctacacgacgcccactcctgtgcagaagtactcgatccccatc
gttggccttggccgtgacctcatggcttgtgcccagactggttccggcaagactggtgga
ttcctcttccccatcctctcgtcgctgttcacctacggcccgtccccccctcctgccgac
aactcgtacagctcgtacagccgccgcaaggcataccccacggccctcatccttgctccc
acccgtgagctcgtttcgcagattcacgaggaggcgcgcaagtttgcgtaccgctcctgg
gtccgccccgccgtcgtctacggcggtgccgacattggccagcaaatccgccagctcgac
cgcggctgtgaccttctctcggccacgcccggtcgtcttgtggacctgatcgagcgtggt
cgcatctcgcttgccaacatcaaatacctggttctcgacgaggccgaccgcatgctcgac
atgggtttcgagccccagatccgcaggattgttgagggcgaggacatgcccggcgtgcag
gaccgccagactctcatgttctcggccaccttccccaaggagattcaggtcctcgcgcgc
tccttcctcaaggactacatcttcctttcggttggtcgtgtgggctccacttcggagaac
attactcagcgcatcgagtatgtcgacgagcacgacaagcgctcgctcctcttagacctg
ctcctggctgagcagtcgggtggtttggtccttgtcttcgttgagaccaagcgcatggcc
gactcgctctgcgacttcctctgctcgcagcgccacaacgccacctcgattcacggtgac
cgcactcagcgtgagcgtgaggcggctctgcatgcgttccgcaccggtcgtgcccccatt
ctcgtcgcgactgcggtcgctgctcgtggtcttgacatccccaacgtcacgcacgtcatc
ctctacgacctccccaccgatgtcgctgaatacactcaccgcatcggtcgtactggtcgt
gccggtaacactggtacctcgaccgcgttcttcaaccgcaacaaccttgcgatcggtcgt
gacctcatcgacctcctcaccgaggccaaccaggaggttccccagtggcttgtcgacatc
tcgcaggagcgctcgttcggcggtggcggctacggtcgtcgcggcggcggtgggcgtggt
ggcggtggccgagcgggtggccgtgacgcgcgtaccggcttcggcggcggcggctacggt
ggtggcggcggcggcggcggcttcggcggtcgcggtggtggctacggtggcggctacggt
ggcggcggcggcggtggctacggcggcggctacggcggcggcagcggcttccctcctgct
tccggctcgtcgggtgccagctggtggtaa
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