Cutaneotrichosporon cavernicola: CcaHIS019_0606340
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Entry
CcaHIS019_0606340 CDS
T09540
Symbol
RFA1, CcaverHIS019_0606340
Name
(RefSeq) uncharacterized protein
KO
K07466
replication factor A1
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03030
DNA replication
ccac03420
Nucleotide excision repair
ccac03430
Mismatch repair
ccac03440
Homologous recombination
ccac03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CcaHIS019_0606340 (RFA1)
03420 Nucleotide excision repair
CcaHIS019_0606340 (RFA1)
03430 Mismatch repair
CcaHIS019_0606340 (RFA1)
03440 Homologous recombination
CcaHIS019_0606340 (RFA1)
03460 Fanconi anemia pathway
CcaHIS019_0606340 (RFA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccac03000
]
CcaHIS019_0606340 (RFA1)
03032 DNA replication proteins [BR:
ccac03032
]
CcaHIS019_0606340 (RFA1)
03400 DNA repair and recombination proteins [BR:
ccac03400
]
CcaHIS019_0606340 (RFA1)
Transcription factors [BR:
ccac03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
CcaHIS019_0606340 (RFA1)
DNA replication proteins [BR:
ccac03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
CcaHIS019_0606340 (RFA1)
DNA repair and recombination proteins [BR:
ccac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
CcaHIS019_0606340 (RFA1)
MMR (mismatch excision repair)
CcaHIS019_0606340 (RFA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
CcaHIS019_0606340 (RFA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
HROB
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
85498045
NCBI-ProteinID:
XP_060459440
LinkDB
All DBs
Position
6:complement(join(1626286..1626387,1626421..1626628,1626664..1627623,1627685..1627939,1628004..1628144,1628294..1628427))
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AA seq
599 aa
AA seq
DB search
MSSPLTAGFCREMYNSADTPEGNPILQVLSIKRIQAANSNTDRFRVILSDGQYFVQSMLA
TQLNNLVENESLKKNVVIKLTQFVTNTVQNKKLIIILGLDVQPWQGDKIGSPISIESAGP
PAPAAAAPAAPAPAAGNRGGASNSRAQPAGGARRAGAGKGDMGPIFPIEGLSPYQNKWTI
KARVTQKSDIKHWSTQRGEGKLFSVNLMDETGEIRATGFNDAVDNFYNVLEEGKVYFISR
ARINIAKKQFSNLNNEYEIMLESNSEIEPCDDDSVPQVKYNFKPLANLDDVVKDGIVDVI
GVVKEVHDLGSVTSKATQKPFAKRDIMIVDQSGQSVRLTLWGRTAENFSATDEPVIAFKG
VKVGDFGGRSLSMFSSATMSVNPDIGEAHALRGWYDAEGRGKSFNTFSNASVNGGAMGAV
KPSELKTIGEAKDQGLGMNDKVDYFTTTATVMFIKQETFSYPACANPDQSCNKKVIDEGT
GWRCEKCDRSWPAPIHRYILQMNVMDYTSSFWVTAFNEVAEQLLGISANDLMRFKEEGDP
QFEKYLAKAQGKTWTFQMMAKQDSFNDQVRVRYQCRRAAAIDFVADNADLIAKIKAIAV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcccactcaccgccggattctgccgggagatgtacaacagcgccgatactccg
gagggcaaccccattctccaggtgctcagcatcaagcgcatccaggcggccaactcgaac
acggaccgcttccgtgttatcctctcggacggtcagtacttcgtccagtcgatgctcgcg
acccagctcaacaacctggttgagaacgagtctctcaaaaagaacgtcgtcatcaagctc
acccaattcgtcaccaacactgtccagaacaagaagctcatcattattcttggcttggat
gtgcagccatggcagggtgacaaaattgggtcccccatcagcatcgagtccgcagggcca
cccgcgccagcagcagctgccccagcggctcctgcgccggctgctgggaaccggggtggc
gcgtcgaactctcgcgctcagcctgccggcggagctcgtcgtgcgggtgctggtaagggc
gacatgggaccgatcttcccaatcgagggcctcagcccgtaccagaacaagtggacgatc
aaggctcgcgtcacccagaagtctgatatcaagcactggtccacccagcgcggcgagggc
aagctcttcagcgtcaacctcatggacgagactggcgagatccgcgcaaccggcttcaac
gacgcggttgacaacttctacaacgttctcgaggaaggcaaggtctacttcatctcgcgc
gcgcgtatcaacatcgccaagaagcagttcagcaacctgaacaacgagtacgagatcatg
ctggagtccaactcggagattgagccgtgcgacgacgactcggtcccgcaggtcaagtac
aactttaagcctctcgccaacctcgatgacgtcgtgaaggacggtatcgtggacgtgatc
ggcgttgtcaaggaggtgcacgacctcggctcggtgacgtccaaggcgactcagaagccg
ttcgctaagcgggacatcatgatcgtcgaccagtccggccagagcgtccgcctcaccctg
tggggtagaaccgccgagaacttttcggccactgacgagcctgtgatcgcgttcaaaggt
gtcaaggtcggcgactttggcggacggtcattgtccatgttcagctcggcgaccatgtcg
gtgaaccctgacattggcgaggcgcacgctctccgtggctggtacgacgccgagggtaga
ggcaagtcgttcaacacgttctcgaacgctagcgtcaacggcggtgctatgggcgctgtc
aagccttctgagctcaagacgatcggtgaggccaaggaccagggcctcggcatgaacgac
aaggtcgactacttcacgaccaccgccaccgtcatgttcattaagcaggagacgttctcg
taccccgcctgcgcgaaccccgatcagagctgcaacaagaaggtcattgacgagggcacc
ggctggcgctgcgagaagtgcgaccgctcctggcctgcacccatccacaggtacattctc
cagatgaacgtcatggactacacaagttcgttctgggtcactgcgttcaacgaggtcgcg
gagcagcttctcggcatttcggccaacgacctcatgcgattcaaggaagagggtgaccct
cagtttgaaaagtacttggccaaggcgcagggcaagacctggacgttccagatgatggcc
aagcaggattcgttcaacgaccaggttcgtgtgcgctaccagtgccgccgtgctgcggcc
atcgactttgtggccgacaacgcagacctgattgccaagatcaaggccattgcggtgtaa
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