Cutaneotrichosporon cavernicola: CcaHIS019_0704550
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Entry
CcaHIS019_0704550 CDS
T09540
Symbol
CcaverHIS019_0704550
Name
(RefSeq) uncharacterized protein
KO
K06100
symplekin
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CcaHIS019_0704550 (CcaverHIS019_0704550)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccac03021
]
CcaHIS019_0704550 (CcaverHIS019_0704550)
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0704550 (CcaverHIS019_0704550)
Transcription machinery [BR:
ccac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CcaHIS019_0704550 (CcaverHIS019_0704550)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CcaHIS019_0704550 (CcaverHIS019_0704550)
U7-dependent histone pre-mRNA processing factors
CcaHIS019_0704550 (CcaverHIS019_0704550)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT
PIN_2
Motif
Other DBs
NCBI-GeneID:
85498744
NCBI-ProteinID:
XP_060460139
UniProt:
A0AA48QYN6
LinkDB
All DBs
Position
7b:join(585538..585847,585879..585993,586026..586209,586244..586563,586604..588872)
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AA seq
1065 aa
AA seq
DB search
MSLYADEEPELYGSASVGPTAPTDPLQALAEALTAESETPDQANKLLAAGSRFEEHPEKL
PDLCTKLLPMVVDGPDSLLRAWTLDMLALTVGRAGLRAEIKLDVARESLEYLYRLLNTGS
VATIRATIPIFATVYPMVFRYIATAGSAGHQLYGVFESSKARIVALVLDPGAQPQSAGVK
AAAWKFVQKVLLVGTRAPSSDPRLRATASDVSIALVQPGSALNAQQLEQETTMLRTQLMT
QLYSTDDPAILHPIINTFPPLAKTRPALAPLIIQSMASWTPSAMEASRRPAMQIRAVEKT
LRAVMAHIAKHPPLVGFSAQLHDALSRQKQRMELAYAADMEERRQRRAKLASGKHPLEAD
AESSTAKRARLDVQPGSGDGKGRVMVDVSQFALEPVIDVVLHGLQAISDEMLVRAFDNAK
QAIQDNDPDAVPVLASCLLGEDVKLEEDVVLNPLDMDLDDDELLMEPLEGELEEQVTITD
FRLPPPEPLPLDEKTEIADSAVQRIWDTGSDLSHLADLKISDGPRAAVQPKEMWMLLLAR
ISSRGGDDKRRLIGEFVARDFGSRAKFATVWLNEEWLAKRRSEKNQYEAGLLAILNAYIP
TLDSKDQSLARFLVGLPELPEAAIDLLEPLCEDPDRMIVGYLSLRELAEHRPPVRPRALQ
TLLQLCTHPERKVRVMAITTVRRWVPNSPMSPTVISFALGVLRRLAVRSHLAVKEENGDT
EEADEDKPIDGEKPAVDADDDQPMEDADIGETIDTKYLGPVDQETVSQHVELAFALSRRD
PDLLDAIFSIYPKIPLPIQAKVEELLAPLIKSLGPSKKLLEILKAFPPGAEPLALRVVKT
LSAEGSSGVLVPVIRSLLAERELDPRFIIPVIGELDKAEIDAQIPRIVSLLSQPDSRDVV
RTAFASALQKMTPADLLVTLHSEKAGLKPTMDAIGICFSMTTVFRSDVLANAMQRIVDQP
TPLPVCFVRTVIQAMRTYKSLVPFIANNALPKLVAKRIWEMPQLWDGFVHLVRLLGQASF
GTLLQMPLEQIRDLVERQPALKAPLKTFVSNKPQARNQLASVLAD
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctctacgccgacgaggagcccgagctctacggctcagcgtctgtcgggcccacc
gccccgacggatccgctccaggcgctcgccgaggctctaacggctgagtccgagacgccc
gaccaggcgaacaaactcttggccgccggtagccgtttcgaagaacatcccgagaagctg
ccggacctgtgtacgaagctgttgccgatggtcgtcgatgggcccgactcactcctccgc
gcatggacgctcgacatgctcgccctcaccgtaggccgcgcaggcctgcgcgcagagatc
aagctcgatgtcgcacgcgaatcactcgaatatctctaccgcctgcttaatacggggtcg
gtggcgactatccgtgctacgattcccatctttgcaaccgtataccccatggtgttccga
tacattgccacggctggatcggctggacaccagctgtatggcgtgttcgagtcgtccaag
gcccgaatcgtcgcactggtccttgatcctggagcccagccacaaagtgcaggcgtcaag
gctgctgcttggaagtttgtgcaaaaggtgcttcttgtcggcactcgcgcgccaagctct
gatccacggttgcgagcaactgctagcgatgttagcatcgcgctcgtgcagccgggttcg
gcactcaacgcgcagcagctcgagcaggagacgaccatgctccgcacgcagctcatgacg
cagctgtactcgaccgacgaccccgccatccttcatcccattatcaacacgtttccacct
ttggccaagacacggccagctcttgcgcctctcatcatccagtccatggcatcgtggaca
ccaagtgccatggaggcatcacgccgaccagcgatgcagatccgcgcagtcgagaagacg
ctgcgcgccgtcatggcccatattgcaaaacacccacctctcgtcggcttctccgcacag
ctccacgatgctctcagccgccagaagcagcgcatggagctcgcgtacgctgccgacatg
gaggagaggcggcaacggcgcgccaagctcgcctccggcaaacacccgctcgaggctgac
gccgagtcgagcaccgccaagcgcgcacgcctcgacgttcagcctgggtctggtgacggt
aagggccgcgtcatggtcgacgtgtctcagttcgcgctcgagcctgtcatcgacgtcgtt
ctgcatgggctccaggccatctcggacgagatgttggtgcgtgcgtttgataacgccaaa
caagcgatccaggacaacgacccagatgcagtgcctgtcctggcgtcgtgtctcttgggc
gaggacgtcaagttggaagaagacgtcgtcctcaatccgctggacatggacctggatgac
gacgagttgctcatggaaccattagaaggcgagctggaagagcaagtgaccatcaccgac
ttccgccttccgccacccgaacccctgccactcgacgaaaagacggagattgcggactcg
gccgtacagcgcatctgggacacagggtcggacttgtcgcacctggcagacctgaagatc
agcgacgggccccgtgccgccgttcaacccaaggagatgtggatgctgctgctcgcgcgt
atctcctctcgcggtggggacgacaaacggcggctcatcggcgagtttgtggcgagagac
ttcgggtcacgtgcaaagttcgcgaccgtctggctcaacgaggagtggctggcgaagcgt
cgatccgagaagaatcagtacgaggctggtctgctggccatcctgaacgcgtacatcccg
acgctggactcgaaggaccagagccttgcgcgcttccttgtcggccttcctgaactgccc
gaggctgcgatcgacctgctcgagccgctatgtgaagatcccgatcgcatgatcgtggga
tatctctcgctgcgcgagctcgccgagcaccgtccacccgtgcggccgcgcgctttgcaa
acgctcttgcagctgtgtacacacccggagcgcaaggtgcgcgtcatggccattacgact
gtgcgtcgctgggtgcccaactcacccatgtcgccgactgtgatctcgtttgcgcttgga
gtgctgcggcgactggctgtgcgctcccatctcgcagtcaaggaggagaacggtgacacc
gaggaggcggatgaggacaagcccatcgacggcgagaagcccgcagtggatgccgacgac
gaccaaccgatggaggatgcggacattggcgagacgatcgacaccaagtacctcgggcca
gtcgaccaggagactgtatctcaacacgtcgaactagcttttgctctctcccgccgcgac
ccggacttgctcgatgccatcttctcgatctaccccaagattcctctacctatccaggcc
aaggtcgaggagctactcgcgccgctcatcaagtcgctcggcccgagcaagaagctgctc
gagatcctcaaggccttcccacccggagccgagccgctcgcgctgcgcgtagtcaagact
ctcagtgcggagggttcatcgggtgttctcgtccccgtgattcgcagtttactggccgag
cgcgagctcgacccgcgcttcatcattcccgtcatcggtgagctggacaaggccgagatc
gacgcgcagattccgcgcatcgtctccctcctctcccagccagacagccgcgacgtggta
cgcacagcctttgcgagcgcgctacagaagatgacgccggccgacctgctggtcactcta
cacagcgagaaggcgggcctcaagccgacaatggacgcgattggcatctgctttagcatg
acgaccgtcttccgctcggacgtcctagcaaacgcgatgcagcgtatcgtcgaccagccg
accccgctgccagtgtgctttgtgcgcaccgtcatccaggccatgcggacatacaagtca
ctcgtgccctttatcgccaacaatgcgctccccaaactcgttgccaagcgtatctgggag
atgccgcaattgtgggacggtttcgtccacctcgtccgcctgcttggccaagcctcgttt
ggcacattgctccagatgccactcgagcagatccgcgacctcgtcgagcgccagccagcc
ctcaaagcgccccttaagacgtttgtctcgaacaaaccgcaggcccgcaaccagctcgca
agcgttctggcggattag
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