Cervus canadensis (wapiti): 122420236
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Entry
122420236 CDS
T07554
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccad03036
]
122420236 (CHD9)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122420236 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
122420236
NCBI-ProteinID:
XP_043291062
LinkDB
All DBs
Position
18:complement(43798295..44017720)
Genome browser
AA seq
2898 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLPDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMTDYEQLNQFDSMKFHQVNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQPGHSHSMHQTKSFVAHHDFALFQANEQQTQCTSLRSQ
QNRNNLNPGQNSLSQSKTFMDVNVSGPHRVSVNHPPQMNNASTSQQSLSMQQFSQTSNPS
VHFLKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNSLLQPSAVLAANHT
NQTLSDFTGSNSFSPHRGIKQESTQHMLNPNTSLNSSTFQMLHSSHPQGNYNSKLSPVHM
SFPDPVDSGAQMGHFSDHVETNGFPSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFD
ESAFGQDNSSHVLDHDLDRQFTSHLVTRPSDMVQTQLHNQARSWHSSLSNHQHLHDRNRL
CLQRQPPSSKKSDGSGTYTKLQNTQVRIMSEKKQRKKVESESKQEKANRIISEAIAKAKE
RGERNIPRVMSPENFPSASIEGKEEKKGRRMKTKPKDKESKKTKTCSKLKEKTKIGKLII
TLGKKQKRKNESSDEISDAEQMTQHAFKEEDSQKRRSNRQIKRKKYAEDVEGKQSEEEVK
GSVKIKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRTIKKEISPGVMIDTEEFFVK
YKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVL
EVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLDR
PPPNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQ
GRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMME
LRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDR
ASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDI
DQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISG
RNSLVIDTPRIRKQTRPFSATKDELAELSEPESEGDEKPKLRRPCERSNGYGRTECFRVE
KNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITP
TEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKH
IKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDA
DKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKP
APAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTRLRRLITAYQRTNKNR
QIQQIQPTFPVPASVMQPLYEEATLNPKIAAKIERQQRWTRREEADFYRVVSTFGVVFDP
DRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPSIFIQPITEE
RASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGSHDRDLLIGAAKHGV
SRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDPKA
VILEDVKVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGE
TDRRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSH
SRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDE
ESVASLSTTQDETQDSFQMNNGTAESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLK
GKWPSARRSYDANAMASFYTTKLLDSSGAATEYSEPSAPPPAGAAVKDEHDQSAQMSKVK
KHVREKEFTVKIKDEGGLKLTFQKQGLTQRRPPDSEDCAPGQQQYLTRLRDLQGASESSL
ASFPKSIPLSGTPIQSTLGANGVLLDNQPVVKKRRGRRKNVEGVDILFFNRNKPPNHVAL
GLTTSQISTGINPALSYTQPQGIPDTETPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHP
GYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFA
PPLKDLCRFLKENAEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG
IAKATAAAAAATATSISGNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPAG
LSSGGEAKNVAAMFPMLLSGMPNLLGMGGLLTKPTESGTEEKKGNDSKEVEGKKERTESQ
NSEKGGENSVSGSPAASSAAALSTAAAASPLALNPLLLSNILYPGMLLTPGLNLHIPTLS
QSNSFDVQKNKNSDLGSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADASS
GSDSTSSSSEDSDSSNED
NT seq
8697 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcccatgatggacttttttgatgatgccaatctgtttggtgagaccttagaa
ggtttgccagatgatgcatttgtacaaccaggacctgtttcactagttgatgaattgaac
ttgggtgcagaatttgaacctttgcacatagactcactgaatcatgttcaaggtactcca
acacatcagaagatgactgattatgaacagttaaatcaatttgattcaatgaaatttcac
caagttaatcagtcttttggtagcccagctgaacatgtgttatcaccacactctcagttt
aattgttctccaatccacccccagaaccaaccgaatggtttgtttccagatgtagcagat
ggcagtcctatgtggggccatcagacagctactagcatttcaaatcaaaatgggtctcct
tttcaccaaccaggacattctcactctatgcatcaaactaaaagctttgtggcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgcacttcgctacgctcacaa
caaaacagaaataatcttaacccagggcaaaattctcttagtcagtctaaaactttcatg
gatgttaatgtttctggtccacacagagtcagtgttaaccatccaccacaaatgaataat
gcatctacttcacaacagtccctttcgatgcagcagttttcccaaacatcaaacccttca
gtacacttcctcaagtgtagcagtcaccaagaaggtaattttaacggaccttctccaaat
atgacttcttgttctgtcagtaattcacagcagttttcttcacattattccttttccagt
aatcatgtgtcaccaaatagtcttcttcaaccctctgcagttcttgcagctaatcataca
aatcagactttgtctgattttactgggagtaattccttttcacctcataggggaatcaag
caagaatcgactcagcatatgctaaatcccaatacatcgttgaattcaagtaccttccaa
atgttgcattcgtcacatcctcagggtaattacaattcaaagttgtctcctgtgcacatg
agcttcccggatcctgtggactcaggagctcagatgggccacttcagtgatcatgtggaa
accaatggctttccgtctttggaagagaacttacttcatcaagtggagtctcaaactgag
ccattcacaggacttgacccagaagacctcctgcaggagggtctccttccccagtttgat
gagtcagcgtttgggcaggataattcaagtcatgttttagatcatgaccttgatcggcaa
tttacttcacatcttgtaacacggccttctgatatggttcaaactcagttgcacaatcag
gctcggagttggcattcatcactttctaatcatcagcatttacatgatagaaatcgcctg
tgtttacagcgacagcctccatcttccaagaagagtgatggttctgggacatacactaag
ttgcagaatacccaggtgaggatcatgtccgagaagaagcagagaaaaaaggtggaatca
gaaagcaagcaagaaaaggctaatcgtataatatcagaggccatagcaaaagcaaaggag
cgaggggaacgcaatattccacgagtaatgagccctgaaaactttcctagtgcttcaatt
gaaggaaaagaggaaaagaaaggaagaaggatgaaaaccaagccaaaggacaaagagagc
aaaaagacaaaaacttgttctaaattaaaagagaagacaaaaattgggaaactcattatt
acattgggtaagaaacaaaagagaaagaatgagtcttcagatgaaatatctgatgcagag
cagatgacacagcatgcattcaaagaggaagactctcaaaaaagaagatcaaatcgacaa
attaaaaggaaaaagtatgcagaggatgtagaagggaagcagtctgaagaagaggttaaa
ggctctgtgaaaataaaaaagaattcagctcctttgcctgctgaacagcctttacagtta
tttgtggagaatccgagtgaagaagatgctgcaattgtggacaagatactgtcttctaga
actattaaaaaagaaatatcacctggagtgatgattgatacagaagaattttttgtaaaa
tacaagaattactcttatcttcactgtgaatgggccacagaacagcagcttctgaaagat
aaaaggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacacttt
tttgcagatatggaagaagaaccatttaacccagactacgttgaagtagacagagtgtta
gaagtctctttttgtgaagataaagatactggtgagcctgttatttactatttagtaaag
tggtgctcattaccatatgaagatagtacttgggaactaaaagaagatgtagatcttgca
aaaatagaagagtttgagcaattgcaagcttcaaggcctgacacaagacatttggatcgt
cctcctcctaatatttggaaaaaaatagatcaatccagggattataaaaatggcaatcaa
ctcagggaataccaactggaaggactcaactggctcttattcaattggtacaatagacga
aactgcattttagcagatgaaatgggtcttggcaaaaccattcaatcaattacattcctc
tacgaaatccttctgactggtataagaggacctttcctgattattgctccactttctact
attgcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttatcat
gggagcctgattagcagacaaatgatacagcaatatgagatgtacttcagggactcacag
gggcgtattattcgaggagcttacagattccaagccatcatcaccacttttgaaatgatt
cttggaggctgtggagagcttaatgcaattgaatggcgatgtgtaattattgatgaagca
cataggttaaaaaataaaaactgtaaacttctagaaggtctgaaactcatgaatctggaa
cacaaggtgcttttgactggcacacctctccaaaatacagttgaagaactattcagtctt
cttcactttctggagcccctaaggtttccttctgaatcaacgtttatgcaagaatttggg
gatctgaaaacagaggaacaggtgcagaaacttcaggctatcttgaaaccaatgatgttg
agacgattgaaagaagatgtggaaaagaagttggcacctaaggaagaaaccatcattgaa
gtagaacttactaacattcagaagaaatactaccgggctattctggagaagaacttttca
tttttatccaaaggagcagggcagactaatgtacccaacttggtcaataccatgatggag
ctcaggaagtgctgtaatcacccgtatcttatcaaaggtgctgaggaaaaaatacttgga
gaatttagagatacatataatccagctgcttctgactttcatcttcaagcaatgatccag
tctgctggtaaattggtccttattgataaattgcttcccaaaatgaaagcaggaggtcat
aaagtgctcatcttctctcagatggtacgctgcctagatatcctggaggactatcttata
cataaaagatatttatatgagcgaattgatggaagagtcagagggaatcttcgacaagct
gctatagatcgatttagtaaacctgattcagatcgatttgtctttcttctgtgtacccga
gctggtgggttgggcatcaacttaactgcagctgatacatgtataatttttgattctgat
tggaatcctcaaaatgaccttcaggcccaagctcgttgtcacagaattggtcagaataaa
gcagttaaagtctaccgactagtgactcgtaactcatatgaaagagagatgtttgaccga
gccagtctgaaactgggtctagataaggctgtgttacagagcatgagtggaagagaaagt
aatgttggtggtattcaacagctttccaaaaaggaaatagaagatctgcttcgaagaggt
gcttatggtgccattatggaagaagaagatgaaggctctaaattctgtgaagaagatatt
gatcagattttactacgtcgtacaaaaaccattacaattgagtcggaaggacgtgggtca
acatttgccaaggcaagttttgtggcatctggaaaccgaacagatatttcattagacgat
cccaacttctggcaaaaatgggcgaaaaaggcagaaatagatatagatgccatcagtggt
agaaacagcttggttattgacactccaagaattaggaagcaaacaagacccttcagtgcc
acaaaagatgagttagctgaattatctgaacccgaaagtgaaggagatgaaaagcccaaa
cttcggagaccctgtgagcgttcgaatggctatggaagaactgaatgctttagagtagag
aaaaatctgctagtttatggatggggccgatggagggagattctgtctcatggccgtttt
aaaaggcagctaaacgagcacgatgtagaaattatctgccgagccctcttggcgtattgc
cttgttcactaccgaggagacgagaaaattaaaggcttcatatgggatctcattactcca
actgaagatgggcagacacgagagctgcagaatcatctaggcctgtcagccccggtacct
agaggtcgaaaaggaaagaaagtaaagactcagacaagctcatttgatatacaaaaagca
gaatggcttcgaaaatacaatcctgagcaactacttcaagatgaaggctacaaaaaacat
ataaaacaccactgtaataaagttttgcttcgtgtaagaatgctgtattatctaaagcaa
gaagtcattggaaatgagtgtcagaaagtttttgatggagttgatgcaagtgacattgat
gtttgggtcccagaaccagaccactcagaagtcccagctgagtggtgggactttgatgct
gataagtcgctccttattggggtttttaaacatggttatgaaaagtataacactatccga
gcagacccagcattgtgctttttggaacgagtaggaaaacctgatgagaaagcagttgct
gcggaacagagggcaaatgattatatggatggggatgtggaagatccagaatacaaacct
gccccagctatctttaaagatgatatagaggatgatgtttcctcaccaggagatcttgtt
atagcagatggagatggtcagctgatggagggtgataaaatttattggcctactcagtca
gccttaactacccgtttgaggcgtctcattactgcatatcagcgtactaataaaaacaga
caaatccaacagatacaacctactttccctgtgcctgccagtgttatgcagcctctttat
gaagaagccactcttaaccctaaaatagcagccaagatagaaagacagcagagatggaca
agaagagaagaagccgatttttacagagttgtatctacatttggagtggtatttgatcct
gacagaggccagtttgattggacaaaatttagggccatggctcggctacataagaaaact
gacgatagcttggagaagtacctgtacgctttcatgtctatgtgtcggagggtttgtcgt
cttccttccaaagaagaattggtggatccaagtatttttatccagccaatcacagaagaa
cgtgcttctcggactttatatcgcattgaacttctaaggaaagtaagggaacaggccctc
cgacatccacaattgtttgagcgcttgaagctttgccatccaaatccagacttaccagtc
tggtgggaatgtggctctcatgatagggacttgctcattggagctgctaaacacggggtg
agccgaacagactatcacattcttcgggaccctgaactctcatttatggccgctcagagg
aactacagtcaaagtaagatggctcattcaaggacttctaccccacttttacagcaatat
caagtagcactttctgcttctcctcttacctctctacctaggctcctagatcctaaagct
gttattctagaggatgtgaaagttaaaagtgaaaaccttaaagaggagcctcagtcttct
gaagaagagtctatgtcttctgaggaaaccaggacactaataaagtctgagcctgtaagt
ccaaagaatggtgttttaccacaggctactggagaccagaaatctggtggaaaaggtgaa
acagacagacgcatggttgcagccagaactgagcctctaactccaaacccagcttctaag
aagcagcgagtccacaaaagaggatcagagtctagttctgattctgactctgattctgag
agatcgtcctgttcttccagatcatcttcttcctcgtcttcctcctcttcgtgttcccac
tctcgatcaggctctagctcttcttcctcctcctcttgttcttcagcatcatcttcatcc
tcatcctcgtcttcctcttcctcctcctcctcctcatcttcgtcagaagaaagtgacagt
gaagaagaggaagtccaaaagagagcagaaggtacccctcacatgaaagcctatgatgaa
gaaagcgtcgcatcactgagcactacccaggatgagacccaggatagtttccagatgaac
aatgggacagcagagtctgcttacatcctacagggtggatacatgctggcagcatcatat
tggccaaaggatcgtgtgatgatcaaccggctggacagtatttgtcaaacagtcctgaaa
gggaagtggccttcagctagaagaagttacgatgccaacgccatggcttctttctatacc
acaaagctgctggacagctctggtgcagccacagagtacagcgagcccagcgcgccccct
cctgcaggtgctgcagtcaaagacgagcacgatcagtcagcacagatgtcaaaggtgaag
aagcatgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaagttg
acatttcagaagcaagggctcactcagagaaggccgccggacagtgaagactgtgctcct
gggcagcagcagtacctcactagacttcgggaccttcaaggtgcgtcagagagcagcctc
gccagtttcccaaaatccataccactatcaggtactcccattcaatcaacccttggtgcc
aatggagttttattagacaaccagcctgtagtcaaaaaaaggcggggaaggaggaagaat
gtagaaggtgttgacatcctcttttttaacagaaataaaccacctaatcatgttgcgtta
ggcttaaccacctcacagatttctacagggataaatccagcactatcctatactcaacct
caaggaattcctgatacagaaactcctgttccagttattaaccttaaagatgggacaaga
cttgcaggcgatgatgcaccgaagagaaaggatttggaaaagtggcttaaggagcaccca
ggttatgtggaagatttaggagcttttattcctagaatgcaactccatgaggggagaccc
aaacaaaaaaggcatcgttgcagaaaccccaataaattagacgttaatagtctcactgga
gaagaacgtgttcagctgattaacagaagaaatgccagaaaggttggaggtgcatttgct
ccccctctgaaagatttgtgtcggttcctgaaagaaaatgcagaatatggagtagctcct
gaatggggggatgttgttaagcagtctggatttcttccagaaagtatgtatgaacgtatt
ctcactggtcccgtggtcagagaggaagtaagcaggcgagggagacgacctaaaagtgga
attgcgaaggccacagcggcagcagcagctgcaactgccaccagtatttcaggcaatcct
ttgctagccaatggattacttccaggtgtggacctcacaactcttcaggccttacaacaa
aacctacaaaacttgcaatcactgcaagtgactgcagggctgatgggaatgcctgctggc
ctttcttctggaggagaagctaaaaacgtggccgccatgttccccatgctgctgtcggga
atgccaaatctgttgggcatgggagggctcctgacaaagccgacagaatccggaacagaa
gaaaaaaagggaaatgactctaaggaggtagaagggaaaaaagagaggacagagagccaa
aactccgagaagggcggtgaaaactctgtgtcaggttctcctgcagcgtcctctgctgct
gcattaagtacagctgcagccgccagcccgttagccctgaacccactgttactatctaat
attctttatccagggatgcttctcactccaggccttaatcttcatattccaactttgtct
cagtccaacagttttgatgtacagaaaaacaaaaacagtgacttaggctcatctaagtct
gtggaagtaaaggaagaagattccagagttagagatcaggaagacaaagggggaactgaa
ccgagtcctctccacgaaaacagcacagatgagggttcagagaaagccgatgcttcatct
ggatctgatagtacatcatcgtcatccgaggattcagattctagtaatgaagactga
DBGET
integrated database retrieval system
