Cervus canadensis (wapiti): 122420591
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Entry
122420591 CDS
T07554
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccad01001
]
122420591 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccad04121
]
122420591 (TRIM28)
Enzymes [BR:
ccad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122420591 (TRIM28)
Protein kinases [BR:
ccad01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
122420591 (TRIM28)
Ubiquitin system [BR:
ccad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122420591 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_5
zf-RING_UBOX
PHD_2
PHD-1st_NSD
zf-C3HC4
YaaC
Motif
Other DBs
NCBI-GeneID:
122420591
NCBI-ProteinID:
XP_043291799
LinkDB
All DBs
Position
18:complement(10364241..10370517)
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AA seq
877 aa
AA seq
DB search
MAASAAAASAAAAAASGSPSPGEGSAGAEKRAAASSAAGSASASAAVSASASSPAGGGGE
ALELLEHCGVCRERLRPEREPRLLPCLHSACSACLGPPAPAAANSSGDGGAAGDGSVVDC
PVCKQQCFSKDIVENYFMRDCGGKAATDSQDANQCCTSCEDNAPATSYCVECSEPLCETC
VEAHQRVKYTKDHTVRSTEKREEVSRRGSGGKGPAKSRDGERTVYCNVHKHEPLVLFCES
CDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRSSIRQ
VSDVQKRVQVDVKMAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQE
HILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAE
AFGKIVAERPGTNSTGPAPMAPPRAPGPLSKQGSGSSQPMEVQEGYGFGSDDPYSSAEPH
VSGVKRPRSGDGEVSGLMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIER
GAAAAAAGQPGTAPSGVPGAPPLPGMAIVKEEETEAAIGAPPAATEGPETKPVLMALGEG
PGAEGPRLASPSGSTSSGLEVVAPEGTSAPAGGPGSLDDSATICRVCQKPGDLVMCNQCE
FCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLNLDGGDSTGVVAKLSPANQQKC
ERVLLALFCHEPCRPLHQLATDSTFSLVSSGTWEGGRCRGSLASPSACGLCLQDQPGGTL
DLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNE
AFGDTKFSAVLVEPPPLSLPGAGLSAQDLSSGPGEGP
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttcggcggcggcggcctcggcggcggcggcggccgcctccggcagcccgagc
ccgggtgagggctcggcgggcgccgagaagcgcgccgccgcctcctcggccgcgggctca
gcatcggcctcggcggcggtgtccgcctcggcgtcgtcacccgcggggggcggcggcgag
gcgctggagctattggagcactgcggcgtgtgtcgggagcgcctgcggccggagagggaa
ccgcgcctgctaccttgcctgcactcggcctgcagcgcttgcctcgggcccccggcgcct
gcagccgccaacagctcgggggatggaggtgcagcgggcgacggttctgtggtggactgt
ccagtatgtaagcagcaatgtttctccaaagatatcgtggagaattatttcatgcgagac
tgtggcggtaaggccgccacggattcccaggatgcgaatcagtgctgcactagctgtgag
gataatgccccagccaccagttattgtgtggagtgctctgagccgctctgtgagacctgt
gtggaggcgcaccagcgggtgaagtacaccaaggaccacaccgtgcgctccactgagaag
agagaagaggtctccaggcgtggctcaggaggaaaagggccagccaagtcgagggacggt
gagcgcactgtgtattgcaatgtgcacaagcacgagccccttgtgctgttctgcgagagc
tgcgacaccctcacctgccgggattgccagctcaacgcccacaaagaccaccagtaccag
ttcctggaggatgcagtgcgaaaccagcgcaagctcctggcctcattggtgaagcgcctc
ggggacaagcatgcaacactgcagaagaacaccaaggaggttcgcagctcgatccgccag
gtgtctgacgtacagaagcgcgtgcaagtggacgttaagatggccatcctgcagatcatg
aaggaactgaacaagcggggccgcgtgctggtcaacgatgcccagaaggtaactgagggg
cagcaggagcgcctggaacggcagcactggaccatgaccaagatccagaagcaccaggaa
cacatcttgcgctttgcctcgtgggctctggagagtgacaacaacacggctttgttgctc
tccaagaagctgatctacttccagctgcaccgggcccttaagatgattgtggaccccgtg
gagccccatggcgagatgaaatttcagtgggacctcaatgcctggaccaagagtgcagag
gcctttggcaagattgtggccgagcgtcctggcaccaactccacaggcccggcacccatg
gcccctcctcgggctccggggcctttgagcaagcagggatctggcagcagccagcctatg
gaggtgcaggaaggctacggctttggatcggatgacccttactcaagtgctgagccccat
gtgtcaggggtgaagcggccccgctcaggtgacggcgaggtgagtggcctcatgcgcaag
gtgccacgggtgagcctcgaacgcctggacttggatctcacggctgacagccagccacca
gtcttcaaggtcttcccaggcagcaccactgaagattacaacctcatcgtcattgagcga
ggtgctgctgccgctgctgctggccagcctgggactgcgccctcaggggtccctggggcc
cctcccctgccgggaatggccattgtcaaggaggaagaaacagaggctgccattggagct
ccgcctgctgccaccgagggcccggagaccaagcctgtgttgatggccttgggggagggc
cctggtgcagagggtccccgcctggcttcacccagtggcagcaccagctcaggtctggag
gtggtggctccagagggcacctcagccccagctggtggcccaggttccctggatgacagt
gccaccatctgccgtgtctgccagaagccaggtgacctggtcatgtgcaaccagtgcgag
ttctgcttccacctggactgccacctgcctgccctgcaggatgtgccaggggaggagtgg
agctgctctctctgccatgtgctgcccgacctgaaggaggaggatggcagcctgaacctg
gatgggggggatagtaccggagtggtggccaagctctcaccagccaaccagcagaagtgt
gagcgtgttctgctggccctcttttgccatgagccctgccggcctctgcaccagctggct
actgactccaccttctccctggtgagttctgggacttgggagggtgggaggtgcaggggc
tctttggcctcaccttcagcctgtggcctctgcctgcaggatcagcctgggggcaccctg
gacttgacccttatccgagcccgcctccaggagaagctgtcacccccctacagctccccc
caggagtttgcccaggatgtgggccgcatgttcaagcagttcaacaagctgactgaggac
aaggccgacgtgcagtccatcattggcctgcagcgcttctttgagactcgcatgaatgag
gccttcggggacaccaagttctctgctgtgctggtggagcccccgccgctgagcctgcct
ggtgctggcctgagtgcccaggacctgtccagtggccctggtgagggcccctga
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