Cervus canadensis (wapiti): 122420709
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Entry
122420709 CDS
T07554
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03015
mRNA surveillance pathway
ccad04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122420709 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122420709 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccad03021
]
122420709 (SYMPK)
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122420709 (SYMPK)
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122420709 (SYMPK)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122420709 (SYMPK)
U7-dependent histone pre-mRNA processing factors
122420709 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
122420709
NCBI-ProteinID:
XP_043292037
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All DBs
Position
18:complement(18258014..18291640)
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AA seq
1274 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLNVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLDPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQSKEEPKEEK
AVKPESVLIKRRLPAQGQAISVVGSLSSMSSLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGVKGALDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSAKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPETKEAPAGPLEEDDLEPLALAPPPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGLGAPSSSSSSSSSSVRPGPVQPEEAIDFREEGPECET
PAIFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLLSKEERSPQPLAAAGEDTVQTPSP
AAEEAGEPETKGNS
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagtggggacagcgtcacacgccggagcgtggcatcacagttcttcact
caagaggaggggccgggcatcgatggcatgaccacatcagagagagtggtggatctcctg
aaccaggcagcactgatcaccaacgactcaaagatcacagtgctcaagcaggtccaggaa
ttgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgctttc
caggcagacaagtccatcgaagtgcgcaaatttgtcatcggcttcatcgaggaggcttgc
aagcgagacattgagctgctgctgaaactgatcgcgaacctcaacatgctcttgagagat
gaaaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtgatcagcgagctccaggaggcctgctgggatatg
gtgtcggccatggctggggacatcatcctgctgctggactctgacaacgacggcatccgt
acccacgccatcaagttcgtggagggcctcattgtcaccctttcgcctcgcatggctgac
tcggaggtgccccgacgccaggagcacgacatcagcctggaccgcatccctcgtgaccac
ccctacatccagtacaatgtgctatgggaagaaggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgctatctcctccatcaacctgaccacagccctgggctccctg
gccaatattgcgcgccagaggcccatgttcatgtctgaggtgattcaggcctacgaaacc
ctccacgccaacctgcccccaacgctggccaaatcccaggtgagcagcgtgcgtaagaac
ctcaagttgcacctgttgaatgtgctgaagcacccagcgtctttggagttccaggctcag
atcaccaccctgctggtggacctgggcacgcctcaggcggagatcgctcgcaacatgccc
agcggcaaggatgcccgcaagcggccccgagacgactcggattccacgctgaagaagatg
aagctggagcccaacctgggggaagacgatgaggacaaggacttggacccaggcccctcg
ggaacctcgaaggcctcagcccagatctcaggccagtcagacacagacatcacggccgaa
ttcctccagcctctgctgacacctgacaacgtggccaatctggtcctcatcagcatggtg
tacctgcccgaggccatgcctgcctccttccaagcgatctacaccccagtggagtcagca
ggcaccgaagcccagatcaagcacctggctcggctcatggccacgcagatgacggccgca
ggactggggccaggcgtggagcagaccaaacagagcaaggaggagcccaaggaagagaag
gcggtgaagccggagagcgtcctgatcaagcggcgcctgccagcccagggccaggccatc
tcggtggtgggctccctgagctccatgtcctccctggaggaggaggcgccccaggccaag
aggaggccggagcccattatccccgtcacgcagccccggctggcgggcgccggcgggcgc
aagaaaatcttccgtctaagtgacgtgctgaagcccctgacggacgcgcaggttgaggcc
atgaagctgggcgctgtgaagcggatcctgcgggctgagaaggccgtggcctgcagcggg
gccgcccaggtgcgcataaagatcctggccagcctggtgacgcagtttgactcgggcctg
aaggccgaggtcctgtccttcatcctggaggacgtccgggcccgcctggacctggccttc
gcctggctctaccaggaatacaacgcctacctcgcagctggcgtcaagggcgccctggac
aaatatgaggactgcctcatccgcctgctctctggcctgcaggagaagccggaccagaag
gatgggatcttcaccaaggttgtgctggaggcgccgctgatcaccgagagcgccctggag
gtgatccgcaagtactgtgaggacgagagtcgcacctacctgggcatgtccactctccga
gaccttatcttcaagcgcccatcccgccagttccagtacctgcatgtcctgctagacctc
agctcccacgagaaggacaaggtgcgttcccaggccttgctgttcatcaagcgcatgtac
gagaaggagcagctgcgagagtatgtggagaagtttgccctcaactacctacagctcttg
gtccaccccaacccgccatcggtgctctttggagccgacaaggacacagaggtggccgca
ccctggaccgaggagacggtgaagcagtgcctgtacctctacctggctctcctacctcag
aaccacaagctgatccacgagctggcggccgtgtacacggaagccatcgccgacatcaag
aggacagtgctgagggtcatcgaacagccgatccggggaatgggcatgaactcaccagag
ctgctcctgctggtggagaactgtcccaagggggcggagacgctggtcacacgttgtctg
cacagcctcacggacaaagtgcccccatccccggagctggtgaagcgggtcagggatctc
taccacaagcgactgccagacgtccgcttcctcatcccagtgctcaatgggctggagaag
aaggaagtgatccaggccctgccaaagctcatcaagctcaaccccatagtggtgaaagag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcagccctgtcccccctg
aaccctggagagctgctcatcgccttacacaacatcgactcggcaaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgttgctcatgagg
accgtcatccagtccttgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccggctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcagcgcaccaagccccagagcttccaggtcatcctgcagctcccaccccagcag
ctgggggccgtctttgacaagtgcccagagctccgggagcccctgctggcccacgttcgc
tccttcaccccccaccagcaagcacacatccccaactccatcatggccatcctggaggcc
agcggcaagcaggagccagagactaaggaagcacctgctgggcccctggaagaggatgac
ttagagcctctggccctggcaccacctccggccccccgaccccctcaagatctcattggc
ctgcggctggcccaggagaaggccttaaagcggcaactggaggaggaacagaagctgaag
cctgggggactgggagccccctcctcgtcctcgtcatcgtcctcttcctccgtgcggcca
ggtcccgtccagccggaggaagccattgatttccgggaagaggggcctgagtgcgagacc
ccggccatcttcatcagcatggacgatgactcggggctgactgaggccgcactgctggac
tctagtcttgagggacccctacctaaggaaactgcagcaggtggattgctttcaaaggag
gagcggagcccccagcccctcgcagcggctggagaagacacagtgcagactcccagcccc
gcggctgaggaagcaggcgaaccggagaccaaggggaacagctga
DBGET
integrated database retrieval system
