KEGG   Cervus canadensis (wapiti): 122422007
Entry
122422007         CDS       T07554                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
ccad  Cervus canadensis (wapiti)
Pathway
ccad03030  DNA replication
ccad03410  Base excision repair
ccad03420  Nucleotide excision repair
ccad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122422007 (RFC1)
   03410 Base excision repair
    122422007 (RFC1)
   03420 Nucleotide excision repair
    122422007 (RFC1)
   03430 Mismatch repair
    122422007 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccad03032]
    122422007 (RFC1)
   03400 DNA repair and recombination proteins [BR:ccad03400]
    122422007 (RFC1)
DNA replication proteins [BR:ccad03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    122422007 (RFC1)
DNA repair and recombination proteins [BR:ccad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     122422007 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 BRCT_2 Rad17 AAA_5 AAA_14 RuvB_N AAA_33 AAA_30 AAA_18 AAA_7 Nexin_C AAA_17 AAA_16 nSTAND3 AAA_19 RNA_helicase NTPase_1 NPHP3_N
Other DBs
NCBI-GeneID: 122422007
NCBI-ProteinID: XP_043294119
LinkDB
Position
19:7651614..7725235
AA seq 1143 aa
MDIRKFFGVIPSGKKLVSETVKKNEKTKSAEESLKAKKGIKEIKVNSSCKEDEFKPKQSN
KKKRIIYDSDSESEETVQVKNAKKRPEKSPLSSKPAKTRPQDPVTYISETDEDDDFVCKK
TASKSKENGGSTNSYLGASNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSIQRSDKK
MVASRRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
AEKDAEERETFSSVQVNLCKAEKPKYPHKEQFSDERKNFSPKKQTKYEGSRESQQRSRSS
AHKTGETSPKASSKLALLKKKEESYNKETQSVASKRKENVIELKETRTPKKIKSSPAKKE
SISPDDAEKRRSNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK
KSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKSSPTKKESESKKCKLTPKRESSIKSLKK
EASVSQTVLDFKEQAAEETNSDGRAGNWADDRSESRVESLLWVDKYKPASLKTVIGQQGD
QSCANKLLRWLQNWHKSPSEDKRHAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVC
QELGYSYVELNASDTRSKNSLKETVAESLNNTSIKGFYSSGTVHAVGMKHALIMDEVDGM
AGNEDRGGVQELIGLIKQTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMM
SIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSHRAKKDIK
LGPFDVARKVFVTGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDAKKHL
MLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGHMTQFPTFPSWLGK
YSSMGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHLRDALVQPLASQGIEGVRDVVALM
DAYYLMKDDFENIMEISNWGGRPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKTHRP
STGPSLDSEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKPSKSEKDKESRKGKGKS
SKK
NT seq 3432 nt   +upstreamnt  +downstreamnt
atggatattcgaaaattctttggggttattccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaaacaaagtctgctgaagaaagtttaaaagcaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaagatgaattcaagccgaagcagtcaaac
aagaaaaagaggatcatctatgattcggattcagaatcagaggaaacagtacaggtaaaa
aatgccaaaaagcgaccagaaaaatcaccactgtcttctaaacctgccaaaacccgaccg
caggatcctgtcacgtacatttcagaaacagatgaagatgatgactttgtgtgtaagaag
acagcctctaaatcaaaagaaaatggaggatctacaaatagttatcttggagcatcaaac
atgaaaaagaatgaggaaaacactaagaccaagaataagcctttgtcaccaataaaactt
acccccacatcagtgctggattattttggaactggaagcatccaaagatcagacaagaag
atggtggcaagcagaagaaaagagccttcacaaaatgcagatgattccagattaaatgat
gaagccatcgccaagcaattacagctcgatgaagatgcagagctggagagacaactgcat
gaagatgaagagtttgctagaacgttggccatgttggatgaagaacccaagaccaaaaag
gctgaaaaggacgcagaagaaagagagacgttttcatctgtacaagtgaatttatgtaaa
gcagagaaacctaaatatcctcataaagagcaattttcagatgaaagaaagaacttcagc
cctaagaagcaaactaagtatgaaggttcaagagaatcccagcaacgttccaggtcatca
gctcataaaacaggggaaacttctccaaaagccagttctaagctggcacttttgaaaaaa
aaagaagagagttataataaagaaacacagtctgtggcctcaaaacgaaaagaaaatgtt
attgagttaaaagagacaagaactcctaagaaaatcaaaagttctccagctaaaaaagag
tctataagtcctgacgatgctgaaaagagacgcagtaattaccaagcttaccgaagctac
ttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaagggagctgaaaat
tgcttggaaggccttacgtttgtaatcacaggcgtgctggagtccattgaacgagatgag
gccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtcagcaagaaaaca
aactacctggtcatgggtcgtgacagtggtcaatccaagagtgacaaggcagcagccttg
gggacaaatattattgatgaagatggcctgttgaatctgattcgaactatgccaggcaag
aagtccaagtatgaaatagctgctgaagctgagatgaagaaagaaaaatccaaattggaa
agaacaccccaaaaaaatgaccaaggaaaaagaaaaagtagtccaactaagaaggaatca
gagtctaaaaagtgcaaactgactcccaaaagggaaagctctataaagtcactaaaaaag
gaagcaagtgtgtctcagacagtcctggacttcaaggagcaggcggctgaggagacaaac
agtgacggccgggctgggaattgggctgatgaccgcagtgaaagcagagtggaaagtctg
ctctgggtggacaagtacaagccagcctcactcaagaccgtaatcggacagcagggcgac
cagagctgcgccaacaaactcctgcgctggctccagaactggcacaagagtccgtccgaa
gataagagacacgcaaagtttggtaaattcgctggcaaagatgatggctccagttttaaa
gcggcattgctctcaggtcctcccggtgttggcaaaacaaccacagcttctctggtttgt
caggaattgggatatagctatgtggagctgaatgcaagtgacactcggagtaagaacagt
ctgaaggagactgttgctgagtcgctgaataataccagcatcaaaggcttctattcaagt
ggaacagtccatgcagtaggcatgaagcatgctctcatcatggatgaagtagatggcatg
gctggcaatgaggacaggggaggagttcaggaattaattggcctgataaaacagacaaaa
attcccattatttgtatgtgcaatgatagaaatcatcccaagattcgctctttggttcat
tattgttttgatcttcgttttcaaagacctcgggtcgaacagattaagggtgctatgatg
tctatcgcatttaaagagggtctaaagataccccctccagctatgaatgaaataattttg
ggagctaatcaagatatcagacaggttttacacaatctgaatatgtggtgtgcacgaaat
aaggcattaacctatgaccaggccaaggctgattctcatagagccaaaaaggatatcaaa
ctgggcccgtttgatgttgcccggaaagtgtttgtaactggagaggagactgctcatatg
tcacttatggacaagtcagatctctttttccatgattattcgatagcacccctctttgtc
caggagaactacatccatgtgaagcccgtagctgcagggggtgacgcgaaaaagcacttg
atgcttttaagcagggcagcagacagcatatgtgatggtgacctagtggaccgtcaaatc
cggaataagcaaaactggagtcttctgcccacacaggccatttatgccagtgttcttcct
ggagagttaatgaggggtcacatgacccagtttcctaccttcccaagttggctggggaag
tactcatctatgggcaaacacgatcgtattgttcaggacctagctttgcacatgagtctc
agaacttactccagcaaaaggacagtaaacatggattatctgtcacatctaagggatgca
cttgtacagcccttggcctcacaagggatagaaggagtacgggatgttgttgctcttatg
gacgcatattatttgatgaaagatgacttcgagaatattatggaaattagcaactgggga
ggcagacctagtccgttctctaaactggatcccaaggtgaaagccgccttcacaagagct
tacaataaagaagtccacctcactccgtattcactccaggcagtgaagacacacaggccc
agcacaggcccgtcgctggattctgaatacaacgaagagttaaatgaagatgactctcaa
tcggatgagaaggaccaggacactttggaaactgatgctatgatcaagaaaaagacaaaa
tcttcaaagccttcaaaatcagaaaaagataaggagtccagaaaaggaaaaggaaaaagt
tcaaagaaatga

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