Cervus canadensis (wapiti): 122423482
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Entry
122423482 CDS
T07554
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccad03016
]
122423482 (RTCB)
Enzymes [BR:
ccad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122423482 (RTCB)
Transfer RNA biogenesis [BR:
ccad03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122423482 (RTCB)
Prokaryotic type
tRNA splicing ligases
122423482 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
122423482
NCBI-ProteinID:
XP_043296530
LinkDB
All DBs
Position
21:complement(54616549..54634895)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagttcttggacaagatcaataagaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtaaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaacgtggctgccctgcctgggattgttcat
cgatccattggtcttcctgatgtccattcaggttatgggtttgctattggaaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtgggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagcgagggctaaaaaaagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtcgccacagacgcacttgtagctatggaaaaagcc
atgaaaagagacaagatcatagtcaacgaccgtcagctggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcacgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatccgctcattgcggttgattaccaacttactggacaaccagtgctc
attggtggcaccatggggacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgccatggagcgggccgtgcactgtcccgagcaaagtcaaga
cgtaatttagatttccaggacgtcctcgacaaattggcagacatgggaattgcaatccgt
gtcgcctcacccaagctggtaatggaagaggcccctgagtcctacaagaacgtgacggat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgaggccaatt
gctgttatcaaaggatag
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