Cervus canadensis (wapiti): 122425781
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Entry
122425781 CDS
T07554
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03015
mRNA surveillance pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122425781
09123 Folding, sorting and degradation
03018 RNA degradation
122425781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122425781
03041 Spliceosome [BR:
ccad03041
]
122425781
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122425781
mRNA cycle factors
Stress granule specific factors
122425781
Spliceosome [BR:
ccad03041
]
Complex C
Other components
Complex C specific factors
122425781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
122425781
NCBI-ProteinID:
XP_043300336
LinkDB
All DBs
Position
23:11594326..11596813
Genome browser
AA seq
675 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PCYTANQLAQMRPNPRWQQGGRPQGFQGMPSAVRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPQAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHVLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTEHPRTN
RFKSQINPHGIQLKV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggacaccatgaactttgatgtaattaagggaaag
ccgatccggatcatgtggtctcagagggatccgtctctgagaaaatctggtgtgggaaac
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttgggaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtaggcagattcaagtctcgaaaagagcgggaa
gctgaacttggagccaaagccaaggaattcaccaatgtttacatcaaaaacttcggggaa
gaggttgatgatgaaaatctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttatgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcaccgggaaggtc
attttcgttggccgtgcacagaagaaagtggagcggcaggccgagttaaagcggaagttt
gaacagctgaagcaggagaggatcagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccatcgatgacgagaagttaagaaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctagaggatgggagaagcaaaggatttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaatggacgcatcgtgggctcc
aagccactgtatgtcgctctggcccagagaaaggaggagaggaaggctcacctgaccaac
cagtatatgcagcgggtggccgggatgagggcactgcctgccaacgccatcttaaatcag
ttccagcctgcagctgggggctacttcgtgccagcagttccccaggctcagggaagacct
ccatgttacacagctaaccagttagcacagatgaggccgaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctgtacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
aacttagcgcctcaggctgctgttgctgccgctgctcctcgggctgttgcaccttacaaa
tacgcctccagcgtccgcagtcctcaccctgccatccagcccctgcaggcaccccagcct
gcggtccacgtgcaggggcaggagccgctgaccgcgtccatgctggctgcagcacccccc
caggaacagaagcagatgctgggtgaacgtctgttcccactcatccagacgatgcactcg
aacctggctgggaagataactgggatgctgctggagattgacaactcggagctgctgcac
gtgctggagtcccccgagtctctccgctccaaggtggatgaggctgtggcggtccttcag
gctcatcatgccaagaaagaagctgctcagaaggtgggcactgagcacccaaggacgaac
cgattcaaaagccaaataaaccctcatggaattcagctcaaggtttga
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