Cervus canadensis (wapiti): 122426041
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Entry
122426041 CDS
T07554
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03082
ATP-dependent chromatin remodeling
ccad04714
Thermogenesis
ccad05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122426041 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122426041 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122426041 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122426041 (ARID1A)
03021 Transcription machinery [BR:
ccad03021
]
122426041 (ARID1A)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122426041 (ARID1A)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
Helix-turn-helix
ARID
122426041 (ARID1A)
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122426041 (ARID1A)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122426041 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
122426041
NCBI-ProteinID:
XP_043300549
LinkDB
All DBs
Position
24:9352060..9420802
Genome browser
AA seq
2287 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQQQQREEAGGEAAAAVAAERGEMKAAAGQES
EGPAVGPPQPLGKELQDGAESNGGGGGGGAGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPG
SGAAAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAAGGTPQPTATPTLNQL
LTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRS
HHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGY
PGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPH
PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQPSPTPYPSQ
QSSTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRF
PPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGAL
SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPA
AVPAGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQP
SGGQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMG
AGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQE
TAVAMHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMAN
NSAGMAASPEMMGLGDVKLTPASKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGG
EPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWREL
ATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPA
GSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSD
PTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGM
GDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGLGPEGNMGTGAPQPNLMPSNPDS
GMYSPSRYPPQQQQQQQRHDSYGNQFSAQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTY
GPPAKRHEGEMYSVPYSAGQGQPQQQQLPPAQPPPANQQQAAQPPPQQDVYNQYGNAYPA
TAAAATERRPAGGPQNQFPFQFGRDRVSAPPGSNTQQNMPPQMMGGPIQASAEVAQQGTM
WQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGP
SAPVPPMTRPPPANYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAG
PPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLK
SGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVG
DPGQRTLLDPGRFSKASSPAPVEGEEEEDLLDPKLEEEEEEEVIENDEEMAFSGKDKAAS
ENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTH
FESKTELLPSRPHVPCPPAPRKYVTAVEGTPGTTEQEGPPPDGPPEKRITATMDDMLSTR
SSTLTEEGAKSVEAAKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLA
KRCICVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQD
QGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAE
AQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDR
KNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHM
QNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDV
LFLIGQS
NT seq
6864 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcagcagcagcgggaggaggcggggggcgag
gcggcggcggcggtcgcggcggagcgcggggaaatgaaggcagccgccgggcaggaaagc
gagggccccgccgtggggccgccgcagccactgggaaaggagctgcaggacggggccgag
agcaatgggggtggcggcggcggcggagccggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggtggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggcc
gccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggcggcggccgccggctccaagccgcctccctcctccagcgcctcc
gcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggc
ccctcagcggccgcagggggaaccccccagcccaccgccacccccaccctcaaccaactg
ctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacggcggc
gggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggg
gctgctgctgctgcggcggcggcggccgcggccgcctcgggaggggcccaacaaaggagc
caccacgcgcccatgagccctgggagcagcggcggcggggggcagccgctcgcccggacc
ccgcagccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcggg
actaacccatactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtac
ccagggcagccatatgggtcccagaccccacagcggtacccgatgaccatgcagggccga
gcgcagagtaccatgggcggcctctcttatgcacagcagattcctccttatggacagcaa
ggccccagcgggtatggtcagcagggccagactccgtattacaaccagcaaagtcctcac
ccccagcaacagcagccaccctactcccagcagccaccatcccagaccccccatgcccaa
ccttcgtatcagcagcagcctcagtctcagccaccgcagctccagtcctctcagcctccg
tactcccagcagccatcccagcctccccatcagccgtccccgactccatacccctcccag
cagtccagcacccagcagcacccccagagccagcccccctactcacagccgcaggcacag
tctccttaccagcagcagcaacctcagcagccagcatcctcgacgctttcccagcaggct
gcgtaccctcagccccagtctcagcagtcacagcaaactgcctactcccagcagcgcttc
cctccaccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctca
atgacctccagtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttca
agcttgcctgatctgtctggttcaatagatgatctccccatggggacagaaggagctctg
agccctggagtgagcacatcagggatttccagcagccagggggagcagagtaacccagct
cagtctcctttctccccccacacctcccctcacctgcctggtatccgaggcccctccccg
tccccagttggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgct
gcagtgccagcaggcaaccagatgccacctcggccacccagtggccagtcggacagcatc
atgcatccttctatgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaac
ccccagatgccccagtacagttccccccagcccgggtcagccttatctccacgtcagcct
tccggaggacagatgcacacaggcatgggctcctaccagcagaactccatggggagctac
ggtccccaggggagtcagtacggcccacagggaggctatcccaggcagccaaactataat
gccttgcccaatgctaactaccccagtgcaggcatggctggaagcatgaaccctatgggt
gctggaggtcagatgcatgggcagcctggcatcccaccttacggcacactccctcccggg
aggatgagtcacgcctccatgggcaaccggccttatggccctaacatggccaatatgcca
cctcaggttgggtcagggatgtgtccccctcctgggggcatgaaccggaaaactcaagaa
actgctgtcgccatgcatgttgctgccaactctatccaaaacaggccacccggctacccc
aatatgaatcaagggggcataatgggaactggacctccctatggacaggggattaatagt
atggctggcatgatcaaccctcagggacccccatatcccatgggtggaaccatggccaac
aattcagcagggatggcagccagcccagagatgatgggtcttggggatgtcaagttaact
ccagcctccaaaatgaacaacaaggcagatgggacacccaagacagaatcgaaatccaag
aaatccagttcttctactacaaccaatgagaagatcaccaagttgtatgagctgggtggt
gagcctgagaggaagatgtgggtggaccgttatctggccttcacggaggagaaggccatg
ggcatgacaaatctgcctgctgtgggtaggaagcctctggacctgtaccgcctctatgtg
tctgtgaaggaaattggtggattgactcaggtcaacaagaacaagaagtggcgggaactt
gcgaccaacctcaatgtcggcacctcaagcagtgctgccagctccttgaaaaagcagtac
atccagtgtctctatgcctttgagtgcaagatcgaacggggagaagaccctcccccagac
atctttgcagctgctgattccaagaagtcccagcccaagatccagcctccctcgcctgca
ggatcagggtcgatgcaggggccacagacacctcagtcaaccagcagctccatggcagaa
ggaggagacctgaagccaccaactccagcatccacaccacacagccagatcccccccttg
ccaggcatgagtaggagcaattcggtcgggatccaggatgcctttcctgatggaagtgac
cccacattccagaagcggaattccatgactccaaaccctgggtaccagcccagtatgaat
acctccgacatgatggggcgcatgtcctacgagccaaataaggatccttacggcagcatg
aggaaagctccggggagcgatcccttcatgtcctcaggtcagggccccaacggcgggatg
ggggacccctacagtcgagctgccggccctgggctgggaaatgtggcaatgggaccgcga
cagcactatccctatggaggtccttatgacagagtgaggacggagcctggcttaggaccc
gagggaaacatgggcactggggccccgcagccgaatctcatgccttccaacccagactcg
gggatgtattctcccagccgttacccgccgcagcagcagcagcagcagcagcgacatgat
tcctatggcaatcagttctccgctcaaggcaccccttccggcagccccttccccagccag
cagaccacaatgtatcagcagcagcagcagaattacaagcggccgatggatggcacctac
ggccctcctgccaagcggcacgaaggggagatgtacagcgtgccgtacagcgcggggcag
gggcagccccagcagcagcagctgccccccgcccagcccccgcctgccaaccagcagcaa
gctgcccagcctccccctcagcaggacgtgtacaaccagtacggcaacgcctatcctgcc
actgccgccgctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattc
cagtttggccgggaccgtgtctcagcaccccctggctccaatacccagcagaacatgcca
ccacagatgatgggcggccccatacaggcatcggctgaggttgcccagcaaggcaccatg
tggcaggggcgcaatgacatgacctacaactatgccaacaggcagagcacgggctcggcc
ccgcaaggccccgcctatcatggcgtgaaccgaacagacgaaatgctgcacacggatcag
agggccaaccatgaaggcccgtggccttcccatggcacacgccagcccccctatggtcct
tctgcccccgtgccccctatgacaaggccccctccagccaactaccagcccccaccaagc
atgcagaatcacattcctcaggtatccagccccgctcccctgccccggccaatggagaac
cgcacctctccaagcaagtctccattcctgcactctgggatgaagatgcagaaggcaggg
cccccagtacccgcctcgcacatagcacctgctcctgtgcagccccctatgattcggcgg
gacatcaccttcccacctggctctgttgaagccacgcagcctgtgttgaagcagaggcgg
cggctcacaatgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaag
tctgggctgctggcagagagcacgtgggcattagacaccattaacatcctgctgtacgat
gacaacagcatcatgactttcaacctcagtcagctcccagggctgctcgaactccttgtg
gaatatttccgacgttgcctgatagagatctttggcattttaaaggagtatgaggtgggt
gacccaggacagagaacactattggaccctgggagattcagcaaagcgtctagtccagcc
cctgtggagggggaggaggaggaagaccttctagatcccaaactagaggaggaagaagag
gaggaagtaattgaaaatgatgaggagatggccttttcgggcaaggacaaagcagcctca
gagaatagtgaggagaaactgattagtaagtttgacaagcttccagtaaagatcgtgcag
aagaatgacccgtttgtggtggactgctcagataagcttgggcgcgtgcaggagtttgac
agcggcctgctgcactggcggattggtgggggcgacaccactgagcatatccagacccac
tttgagagcaagacagagctgctgccttcccggcctcatgtgccctgcccaccagcccct
cggaagtatgtcacagcagtagagggaacaccagggacaacagagcaggagggccccccg
cctgatggccctccagaaaaacggatcacggctactatggatgacatgttgtccacgagg
tctagcacactgaccgaggagggagctaagagtgtagaggccgccaaggaaagcagcaag
tttccattcggcatcagcccagcgcagagccatcggaacatcaagatcctagaggatgaa
ccgcacagtaaagatgagaccccactgtgtacccttctggactggcaggattcccttgcc
aaacgctgcatctgtgtctccaacaccatccgaagcctgtcgtttgtgccaggcaacgac
tttgagatgtccaaacacccggggctgctgctgatcctgggcaagctgatccttctgcac
cacaagcacccagaacggaagcaggcaccactaacttatgagaaggaggaggagcaggac
caaggggtgagctgcaacaaagtggagtggtggtgggactgcttggagatgcttcgggaa
aacaccttggtcacgcttgccaatatctcggggcagttggacctctccccataccccgag
agcatttgcctgcctgtcctggacggactcctgcactgggcagtctgcccttcagctgaa
gcccaggaccccttctccaccctgggccccaacgccgtcctctccccccagagactggtc
ttggaaaccctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacg
ccccccttcagccgcctggagaagttgtatagcaccatggtgcgcttcctcagtgaccga
aagaaccccgtgtgccgggagatggctgtagtactgctggccaacctggcacagggcgac
agcctggcagcccgcgccatcgcagtgcagaagggcagcatcggcaacctcctgggcttc
ctggaggacagccttgctgccacccagttccagcagagccaggccagcctgctccacatg
cagaacccgccctttgagccaactagtgtggacatgatgcgacgggctgcccgtgcgctg
ctggccctggccaaggtggacgagaaccactcggagttcacgctgtacgagtcacggctg
ttggacatctcggtgtcaccgctgatgaactcgttggtttcacaagtcatttgtgatgta
ctgtttttgattggccagtcatga
DBGET
integrated database retrieval system
