Cervus canadensis (wapiti): 122426839
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Entry
122426839 CDS
T07554
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122426839 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccad03041
]
122426839 (SF3B1)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122426839 (SF3B1)
Spliceosome [BR:
ccad03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122426839 (SF3B1)
Complex B
122426839 (SF3B1)
Complex C
U2 SnRNP specific factors
122426839 (SF3B1)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122426839 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
122426839
NCBI-ProteinID:
XP_043301978
LinkDB
All DBs
Position
24:47785952..47822386
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKNVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagatccgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacgggttattatgac
caggaaatttacggtggaagtgacagcaggtttgctggatacgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaacgatataccacagtcaacagaacag
tatgatccatttgctgagcaccgacctccaaagattgcagatcgggaagatgaatacaaa
aagcacaggcggaccatgataatttcccctgagcgtcttgatccttttgcagatggaggg
aagacccctgatcccaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacggaaacgacgttgg
gatcaaacagctgatcagactcctggtgccactccaaaaaagctatcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgaaacaccaggtcgtgcaaag
ggaagcgaaactcctggagcaactccaggctcaaaaatatgggatcctacccctagtcac
acacctgcgggagctgctactcctggacgaggcgatacaccaggccatgcaacaccaggc
catggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggctgggctgagactcctcgaacggatcgaggtgga
gattccattggtgaaacgccaactcccggagccagtaaaagaaagtcacgttgggatgag
acgccagctagccagatgggtgggagcacacctgttctgacccctgggaagacgccaatc
ggcacaccagccatgaacatggccacccctactccaggtcacataatgagtatgactcct
gagcagcttcaggcttggcggtgggagcgcgaaattgatgagagaaatcgcccattgtct
gatgaagaattagatgctatgttcccagaaggatataaggtacttcctcctccagctgga
tatgttcctattcgaactccagctcgaaagctgaccgcaactccaacacctttgggtggt
atgacaggtttccacatgcaaacggaagatagaactatgaaaaatgttaatgaccaacca
tctggaaatcttccgtttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgtcgatgaatcaactcttagtccagaagagcaaaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggaacacctcctatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctgctgatg
tcacctacacttgaggatcaagagcgccatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagttcgaccatatgtacacaagatcctagtggtcattgagcca
ttgttgattgatgaagattactacgctcgagtggaaggcagagagattatttctaatttg
gcaaaggctgctggactggctactatgatctctaccatgagacctgatatagacaacatg
gatgagtatgtccgtaacacaacagctcgagcttttgctgttgtagcctctgctctgggc
attccttcattattgcctttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcg
agacatactggtataaagattgtacagcagatagctattctcatgggctgtgccatcttg
ccgcatctcagaagtttagttgaaatcattgaacatggtcttgtggatgagcagcagaaa
gttcggaccattagcgctttggctattgctgccttggctgaagcagcaaccccttatggt
atcgaatcttttgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtcttgccgctttcttaaaggctattgggtatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaattcttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctaaaggtggtaaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagatccttcctcccttttttaaacacttttggcaa
catagaatggctttggatagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtcggtgcggcagagattatatccaggatcgtggatgatctgaaggacgag
gcggagcagtacagaaagatggtgatggagaccatcgagaaaatcatgggcaacttggga
gcagccgatattgatcataagcttgaggaacaactgattgatggcattctttatgctttc
caagaacagactacagaggactcagtaatgttgaacggctttggtacagtggtcaatgct
ctcggcaaacgagtcaaaccttacttgcctcagatttgtggtacagttttgtggcgttta
aataacaaatcagcaaaagttaggcagcaggcagctgacttgatctctcgaacagctgtt
gtcatgaagacttgtcaagaggaaaaattgatgggacatttgggtgttgttttgtatgag
tatttgggtgaagagtaccctgaagtcttgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
acccccatcttaaagaataggcatgaaaaagtacaggagaattgtattgatcttgttggg
cgtattgctgataggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggttatattgcaaaggccattggccctcatgatgtattggctacacttctcaacaac
ctaaaagttcaggaaaggcagaacagagtttgtacaactgtggccatagctattgttgct
gaaacatgttcacccttcacagtgctgcctgccttaatgaatgaataccgagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacaccactacttgaggatgctttaatggatagg
gaccttgtacacagacagactgctagtgcagtggtgcaacacatgtcacttggggtttat
ggatttggttgcgaagattcgctcaatcacttgttgaactatgtatggcccaatgtgttc
gagacatctccccatgtaattcaggcagttatgggcgccctggagggcctgagagttgct
attggaccatgtagaatgctacagtattgtttacagggtttgtttcacccagcccggaaa
gtcagagatgtgtattggaaaatttacaactccatttacatcggttcacaggatgctctc
atagcacattacccaagaatctacaacgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
