Cervus canadensis (wapiti): 122427039
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Entry
122427039 CDS
T07554
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccad04121
]
122427039 (PDZRN4)
Enzymes [BR:
ccad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122427039 (PDZRN4)
Ubiquitin system [BR:
ccad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122427039 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
Sina_ZnF
zf-rbx1
IBR_1
Sgf11
zf-RING_6
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
122427039
NCBI-ProteinID:
XP_043302122
LinkDB
All DBs
Position
25:17026855..17437800
Genome browser
AA seq
1037 aa
AA seq
DB search
MGFALERFAESVDPDFQCRVCGQVLEEPLCTPCGHVFCARCLLPWAARRRRCPLQCRPLA
PGELYRVLPLRSLVQKLRIQCDYRPRGCGRSVPLSELAAHVERCDFGPARRRRRGSVSRP
DGPGSGDRSVRGSCRSAPGIRRGGGGGARGGSPGVSGRSCRAPGPRVWRRREKALLAQLW
ELRSEVRLTARRYQEKLTQYMAHVRNFVRDLGGGHDPEGEHKPLTIVLERENDTLGFNII
GGRPNQNNQEETPMEGIYVSKILKNGPADRADGLEVHDKIIEVNGKDLSKATHEEAVEAF
RNAKEPIVVQVLRRTPLSKPAYGTAPEVRLMNASTQTDITFEHIMALAKLRPPTPPVPDI
CPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADADRTEDFEYEEVELCRVSSQEKLGLTVC
YRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQDREAAVAQLSSDECRRI
LLLVARPESQVDEGWLEDERNEFLEELNLAMLEEQHNEAMQRTADEVEQPKKQEEEEGTT
DTATSSSNNHEKDSGVGRTDESLRNDESSEQENATEDPNGTSLKSKRELGQSQDTLGSVE
LQCNESFVSGEYIDSDCIGNQDEECERFRQLLELKCKIRKHGEYDLYYSSSTIECNQGGR
EGVEHELQLLNEELRNIELECQTIMQAHRLQKVTDQYGDIWALHDGGFRSYNTSIDTQRG
KLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVISLTNKKNLRSTMAAN
QSSSGQSTKESTCTKAKTSEQGCVIEGKEKTSESSKLSDPEKTSSEHIPYLSPYHSSSYR
YANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSVCKESQKCSEPKMEWKVKIRSDGTR
YITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRR
REFMMRSRLECLKESPQSGSEGKKEVNIIELSHKKMMKKRNKKILDNWMTIQELMTHGAK
SPDGTQVPNAFLSVTTV
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgcttcgccgagtcggtggacccagatttccagtgcagagtg
tgcggccaggtgctggaggagcccctgtgcacgccgtgcgggcacgtcttctgcgcccgc
tgtctgctgccctgggcggcgcggcggcgccggtgcccgctgcagtgccggcccctggcg
ccgggcgagctataccgggtgctgcctctgcgcagcctcgtccagaagctgcggatccag
tgcgactaccgcccccgcggctgcggccgctccgtgccgctgagcgagctggcggcgcac
gtcgaacgctgcgacttcggccctgcccgccgccgccgccggggcagcgtttcccggcca
gacggcccaggcagtggggaccggtcggtgcgggggagctgccgctcagcgcccgggatc
cgccgcggcgggggcgggggcgcacgcggggggtcgccgggcgtcagcggccggagctgt
agggcgcccgggcctcgggtctggaggcggcgcgagaaggctctgctagcgcagctctgg
gagctgcggagcgaggtgcggctcaccgcccgcaggtaccaggagaagttgacccagtac
atggctcacgtccgcaacttcgtcagggacctgggtggcggccacgacccggaaggagaa
cataaaccactcactattgtattagaaagagaaaatgacactttgggattcaatattata
ggaggtcgaccaaatcagaataatcaagaagaaacaccaatggaaggcatttatgtttca
aaaattttgaaaaatggacctgctgatagagcagatggcctggaagttcatgacaaaatc
attgaggtcaatgggaaggatctctcaaaggctacccatgaagaggcagtggaagctttt
cgaaatgccaaggaacctattgtggtccaggtgctaaggcgaacgcctctcagtaaacca
gcctatgggacagccccagaagtgcgactcatgaatgccagcactcagacggacatcacc
tttgaacatataatggccctggccaaacttaggccacccacccctccagtgcccgacatc
tgtccattcctgctctcagacagctgccattctctccatccaatggagcatgaattttat
gaggacaatgagtatctttccagcttacccgctgatgcagacagaacagaggactttgaa
tatgaggaggtcgagttgtgtcgtgttagcagtcaagagaagctgggtctgacagtctgt
taccgaacggatgatgaagaagacaccggcatttatgtcagcgaggtagatccaaacagc
attgctgccaaagacggccgaattcgagaaggggatcgtattttgcaaataaatggggaa
gacgtccaggatcgcgaggcggcggtggcccagctgtctagcgatgagtgccggagaatc
ctgctgctggttgccaggccagagagtcaggtggatgaaggctggctggaagatgaaagg
aatgaattcttagaggagttaaacttggcgatgttggaagaacagcataatgaagcaatg
cagcgcactgccgatgaggtggagcagccaaaaaaacaagaagaagaagaaggcacaaca
gatacggcaacatcctcatccaacaaccatgagaaggacagtggagtggggcgcacagat
gaaagcttgcggaatgacgaaagctcagagcaggagaatgcaaccgaggatcccaatggc
acatctctgaaaagcaaaagagagctggggcagagccaagacactctgggaagcgttgaa
cttcagtgcaatgagagttttgtgtctggtgaatacattgactcagactgtattggcaac
caagatgaggagtgtgaaagatttcggcaactcttggagctcaaatgcaagataaggaag
catggggagtatgacctgtattactcaagcagcacaatagaatgtaatcagggaggacga
gagggagtggagcacgagctgcagttgcttaatgaagaactgagaaacattgaacttgag
tgccaaactatcatgcaggctcacaggctccagaaagtgacagaccagtatggagatatc
tgggcattgcatgatggaggattccgaagttataacaccagcatagacacccagagggga
aaactagatgacatccttgagcacccagaaaagtcagacaaagacagttccagtgcttac
aacacagctgaaagttgcagaagcactccactcactgtggaccgttcccctgacagttcc
cttccaagagtgatcagcctcaccaataagaaaaacctgagaagcacaatggcagccaac
cagtcctcttccggacagagcactaaagagtcaacctgcaccaaagccaaaacctctgaa
caaggctgtgtcattgaaggcaaagagaagacttcagaaagcagcaagctttctgatcca
gagaaaaccagcagtgaacacatcccttatctctccccttaccacagctcctcctataga
tatgcaaacatcccagcacacgccaggcattatcaaagctacatgcagttaattcaacag
aagtccgcagtcgagtacgcccagagtcagctcagcttggtgagcgtgtgtaaggagtct
cagaagtgctcagaacccaagatggaatggaaggtgaaaatcaggagcgacgggacgcgg
tacatcaccaagagacccgtgcgggaccgcattctaaaggagcgtgccttaaagatcaag
gaggaacggagtggcatgaccacggacgatgacaccatgagcgagatgaagatggggcgc
tactggagcaaagaggagaggaagcaacacctggtccgggccaaggagcagcggcgccgc
cgagagttcatgatgcggagccggctggagtgtctcaaggagagtccccagagcggcagt
gagggcaagaaggaggtcaacatcattgaactgagtcacaaaaagatgatgaagaagaga
aacaagaaaattttggacaactggatgacaatccaagaattgatgacccatggggccaag
tcccctgatggtacacaagttcctaatgcctttttgtctgtcaccacggtatga
DBGET
integrated database retrieval system
