Cervus canadensis (wapiti): 122427141
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Entry
122427141 CDS
T07554
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04151
PI3K-Akt signaling pathway
ccad04510
Focal adhesion
ccad04512
ECM-receptor interaction
ccad04974
Protein digestion and absorption
ccad05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122427141 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122427141 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122427141 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122427141 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
122427141 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccad00536
]
122427141 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ccad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122427141 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122427141
NCBI-ProteinID:
XP_043302382
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All DBs
Position
25:complement(23759641..23790046)
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AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAAGAPGAPGPPGSPGPAG
PVGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDDCTK
HTGKWGQTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacccggagacatcaaggatatcgtaggacccaaggga
cctcctggacctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggtcctcctggcccccctggcccccctggccttggtggaaactttgct
gcgcagatggctggtggatttgatgagaaggctggtggcgcccagatgggagtcatgcag
ggaccaatgggccccatgggacctcggggacccccaggccctgctggtgcccccggacct
caaggatttcaaggcaaccctggtgaacctggcgaacccggtgtttctggtcccatgggt
ccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagacggtgctaaggga
gaagctggtgctccgggtgtgaagggtgagagtggttccccaggtgagaacggttctcca
ggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgccggcgct
gcaggtgctcgaggcaacgacggtcaaccgggccctgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcccgaaggcgctcaaggtcctcgcggtgaaccgggtactcctgggtcc
cctgggccagctggcgccgctggcaaccctggaactgatggaatccctggagccaaagga
tctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagagcctggtggtgct
gggcccgccggtccccctggagaaagaggcgctcctggcaaccgtggcttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggccttgctggt
cccaaaggagccaacggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagcc
cctggtgaagatggtcgccctggacccccaggtcctcagggagctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa
ggactgcccggtgctcctggcctgagaggtcttcctggcaaagacggtgagacaggtgct
gcaggcccccctggacccgctggaccagccggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa
cgaggtttcccaggagaacgtggctcccccggttcccagggcctccagggaccccgcggc
ctccccggcactcccggcaccgatggtcccaaaggcgcagctggcccagccggcccccct
ggggctcagggccctccaggtctgcaaggcatgcccggcgagaggggagcagctggtatc
gccggacccaagggagacaggggtgatgttggtgagaaaggccccgagggcgcccccggg
aaggacggtggacgaggtctgactggccccatcggcccccctggcccagccggtgccaat
ggtgagaagggagaagttggaccccctggtcctgcaggaactgctggtgctcgaggtgcc
ccgggcgaacgtggagagaccggcccccctggacccgctggattcgccggtccccctggt
gctgatggccagcctggtgccaaaggtgaacaaggagaagctggccagaaaggtgatgct
ggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccactggattccccgga
gcagctggccgcgtcggacccccaggttccaatggcaaccctggaccccccggtcctcct
ggtccttctggaaaagatggtcctaaaggtgctcgaggagacagcggtccccctggccga
gctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gaggatggtccttctggtcctgacggtcctccaggtcctcagggtctggctggtcagagg
ggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggtctccccggcccc
tcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccctggc
cctgtgggtcctcctggcctgaccggtcctgctggtgagcctggacgtgagggaagcccc
ggtgctgacggccccccaggcagagatggcgcggctggagtcaagggtgaccgtggagag
actggcgctgcaggtgcccctggagctcccgggccccctggctctcctggccccgccggc
ccagttggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacccgca
ggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaagggagaa
actggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcccggcccccctggtccttctggagaccagggtgcttccggtcctgcaggtccttct
ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggtgctaatggaatc
cctggccccattggacctcctggaccccgtggacgttctggcgagactggccctgctggt
cctcctggaaaccctggaccccctggccctcctggcccccccggtcctggcattgacatg
tctgcctttgctggcctcggccagagagagaagggccccgaccccctgcagtacatgcgg
gccgatgaggcagccggcaacctgagacagcatgatgccgaggtggacgccacactcaag
tccctcaacaaccagatcgagagcctccgcagccccgagggctcccgcaagaacccagct
cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatc
gaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagccagtgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctccgcctg
ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagctgctggcaacctcaagaaggctctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacatacaccgttctgaaggatgactgcacgaaa
cacaccggtaagtggggccagactatgatcgagtaccggtcacagaagacctcacgtctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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