Cervus canadensis (wapiti): 122428460
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Entry
122428460 CDS
T07554
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad05016
Huntington disease
ccad05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
122428460 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
122428460 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122428460 (HTT)
04131 Membrane trafficking [BR:
ccad04131
]
122428460 (HTT)
03029 Mitochondrial biogenesis [BR:
ccad03029
]
122428460 (HTT)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122428460 (HTT)
Membrane trafficking [BR:
ccad04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122428460 (HTT)
Mitochondrial biogenesis [BR:
ccad03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122428460 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
122428460
NCBI-ProteinID:
XP_043304430
LinkDB
All DBs
Position
26:complement(50921009..51043808)
Genome browser
AA seq
3129 aa
AA seq
DB search
MATLEKLMKAFESLRSFQQQQQQQPAPPPQPPQPPQPPPQAQPPSQPPPPPPPPPPPPLG
PAAAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSD
DAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLV
RPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMAAFGNFANDNEIKVLLKAFIA
NLKSNSPTARRTAAGSAVSICQHSRRAQYFYSWLLSVLLGLLAPVEGEHPTLLILGVLLA
LRYLVPLLQQQVKDTSLRGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVTGAL
ELLQQLLRTPPPELLRALTTAGGIRQLAAAKDEPGGRSRSGSIVELIAGGGSSCSPVLSR
KQKGKVLFGEAAPLEDDSESRSEGSSPAFSASVKGEVGGELAASSGVSTPGSTSSAADSA
GHDIITEQPRSQHTLQTDSVDLAACDLTSTATDGDEEDILSHSSSQMSAVPSDPAMDLND
GTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGAESQYPGMQAGPTQDEDEDAAAALP
DEDTEAFRNSSIALQQAHLLKSMGHSRQASDSSVDKFVSREEAAEPGDPENKPCRIKGDI
GQSTDEDSAPLVHCVRLLSASFLLTGEKNALVPDRDVRVSVKALALSCVGAAVALHPESF
FSKLYRAPLDTVEYPGEQHVSDVLNYIEHGDPQVRGATAILCGTLVCSALRRCRFHVAAW
MGAVRARTGNTLSLADCIPLLQKTLKDESSVTCKLACAAVRLCVMSLCSSSYSAWGLQLI
TDLLALRSSSYWLVRTELLETVAEIDFRLVSFLEAKAETLHRGAHHYTGLLKLQERVLNS
VVIYLLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADPVVAVARDQSSVYLTLLMHETQ
PPSHFSVSTVTRIYRGYNLLPSITDVTLENNLSRVIAAVSHELITSTTRALTFGCCEALC
LLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMVTMILTLLSSAWFPLDLSAHQDAL
ILAGNLLAASAPRSLRSSWTSEDEASAAATKQEEVWPALGDRTLVPMVEQLFSHLLKVIN
ICAHVLDEVAPGPAVKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPVSPKKGGEASPAS
RPPETSGPVAANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQSSSEKFGGFLRSA
LDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDS
LSSHPSKSQGRAQRLGSSSARPGLYHYCFMAPYTHFTQALADASLRNVVQAEQDQDTSGW
FDVLQKVSSQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLD
LLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYH
SKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEV
VVSMLLRLIQYHQVLEMFTLVLRQCHKESEDKWKRLSRQVADVILPMLAKQQMHIDSHEA
LGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTLGSVSAVQLWVSGILAILRVLISQSTED
IVLSRIQELSFSPHLVSCPTISRLRDGDSTSALEEHSEGRQTKSLPEETFARFLLQLVGI
LLEDIVTKQLRVEMSEQQHTFYCQELGTLLMCLIHIFKSGTFRRITAAASRLLTDGADGG
FYSLESLNAWVRSMIPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPKRRSLSSTKSLSP
EMSGEDEDPDVASKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLISLS
REPPVQDFISAVHRNPAASGLFIQAIQSRCENLSTPTMLKRTLQCLEGIHLSQSGAVLTL
YADKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSTAQLPAEELIRIQEHLQSSGLGQR
HQRLYSLLDRLRLATAPGSRGPTPPVTSHPLDGDGPLALEAVNPDKDWYVRLVKSQCWTR
SDSALLEGAELVSRIPAGDLGAFMMHSEFNLSLLAPCLGLGLREISGGQRSPLFEAARTA
TLDRVSVVVQQLPAVHQAFQPFLPVQPTAYWSKLDDLFGDAALYRTLAALARALGQYLLV
FSRLPSHLHLPPEKERDTVKFVVMTLEALSWHLIHARVPLSLDLQAGLDCCCLALQLPGL
WSLLAAPDMVTHACSLIHCVRFILEAIVVQPGDQLLSPERRTSTPKAAREDDVDSDTQNP
QYIAAACGMVAEMVECLPSVLALGHKRNSHTPAFLTPVLRNIIVSLARLPLVNSYTRVPP
LVWKLGWSPKPGGDFGTVFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWATLLG
VLVTQPLVMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRN
KPLKALDTRFGRKLSIIRGIVEQEIQAMVSRRENAATHHLYQAWDPVPSLAPATTGALIS
HDKLLLQLNPERELGDMSYKLGQVSIHSVWLGNSITPLREEEWDEEEEEEAEAPAPPSPP
TSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPVILISEVVRSLLVVSDLFTE
RNQFEMMYLTLTELRKVHPQEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLESALRS
SHLPSTLGALHGVLYVLECDLLDDTAKQLVPVVSDYLLSNLQGRAHCVNVHSQQHVLVMC
ATAFYLIENYPLDVGPEFSASIIQLCGVMLSGSEEATPSVVYHCVLRGLERLLLSEQLSR
LDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKVSPGRTSEPSPAAPDSESVIV
AMERVSVLFDRIRKGFPCEARVVARVLPQFLDDFFPPQDVMNKVIGEFLSSQQPYPQFMA
TVVYQVFQTLHGAGQSSMVRDWVMLSLSNFTQRSPVAMAMWSLSCFFVSASTSPWVSAIL
PHVVSRMGKLEQVDVSLFCLVAADFYRHQIEEELDRRAFQSVFEVVAAPGNPYHRLLACL
RSVHKAAAC
NT seq
9390 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcagatccttccagcagcag
cagcagcagcagcctgcgccgccgcctcagccgcctcagccccctcagccgccgccgcag
gcgcagccgccgtctcagccacccccgccgccgccgccgccgccgccgccgccgcttggc
ccggccgcggccgaggagccgctgcaccgaccaaagaaagaactctcagccaccaagaaa
gaccgtgtgaatcattgtctgacaatatgtgaaaacatagtggcacagtctctcagaaat
tctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgcagtgac
gacgcggagtcagatgtcaggatggtggctgacgaatgcctcaacaaagtcataaaagct
ttgatggattccaatcttccgaggttgcagctagaactctataaggaaattaaaaagaac
ggcgccccccggagcctgcgcgctgccctgtggaggtttgctgagctggctcacctggtc
cggcctcagaagtgcaggccgtacttggtgaacctgctgccttgcctgacgcgcacgagc
aagagacccgaggaatctgttcaggagacgctggccgcggcggtccctaaaattatggct
gcttttggcaactttgcgaacgacaatgagattaaggttctgttgaaggctttcatcgca
aacctgaagtccaactccccgacggcgcggcggacggcggcgggctcggcggtcagcatc
tgccagcactccaggagggcgcagtacttctacagctggctgctcagcgtgctcctaggt
ttgctggcccccgtggagggggagcaccccaccctcctgatcctcggcgtcctgctcgcg
ctaaggtacttggtgcccctgctgcagcagcaggtcaaggacacgagcctgagaggcagc
ttcggggtgacgcggaaggagatggaggtctctccctcgacggagcagctcgtccaggtg
tatgagctgaccttgcactacacccaacaccaggaccacaacgtcgtgaccggggccctg
gagctgctgcagcagctcctccgaaccccgccgccggagctcctgcgcgcgctgaccaca
gcgggcggcatccggcagctcgccgccgccaaggatgagcccgggggccgcagtcggagc
gggagcatcgtggagctgatagctggagggggttcttcatgcagccctgtcctttcaaga
aaacaaaaagggaaagtgctctttggagaagcagcacccctggaggatgactcggagtcc
aggtcggagggcagcagccccgccttctcagcctcagtcaagggtgaggtcggaggtgag
ctggctgcctcttctggggtctccacccccggctccaccagctcagcggccgactctgcg
ggtcatgacatcatcaccgagcagccccggtcgcagcacacgcttcagacggactcagtg
gatctggccgcctgtgacttgacgagcaccgccaccgacggggacgaggaggacatcctg
agccacagctccagccagatgagcgctgtcccttccgaccccgccatggacctgaacgac
gggacccaggcctcctcgcccatcagcgacagctcccagaccaccaccgaggggccggat
tcagccgtgaccccttccgacagttctgaaattgtgttagatggcgccgagagccagtac
ccagggatgcaggcaggcccgacacaggacgaggatgaggacgccgctgccgctcttcct
gatgaagacacagaggctttcagaaactcttccatcgcccttcaacaagcacatttgttg
aaaagcatgggccacagcaggcaggcctctgacagcagtgtggataaatttgtctcacga
gaggaagctgccgagccaggggatccagagaacaagccctgccggatcaaaggcgacatc
ggccagtccactgatgaagattccgcccctcttgtccattgtgtccgccttttgtctgct
tcatttttactcacaggggaaaaaaatgccttggttccggacagggacgtgcgggtcagc
gtgaaggcactggccctcagctgtgttggagccgccgtggcccttcatcctgagtctttc
ttcagcaaactctacagagcaccgctggacaccgtggaataccctggggagcagcacgtg
tcagacgtcttgaactacatcgagcacggggacccgcaggtccgaggagccacagccatc
ctctgcgggacgctcgtctgctccgccctccgccggtgccgcttccacgtggcggcctgg
atgggcgccgtcagagcccgcacaggaaatacactttctctggcggactgcattcccctg
ctgcagaagactttgaaggacgaatcctcggttacttgcaagttggcttgtgcagctgtg
aggctctgcgtcatgagcctctgcagcagcagctacagcgcgtgggggctgcagctcatc
actgacttgctggccctgcggagcagctcctactggctggtgcggacggagcttctggag
accgtggcagagatcgacttcaggttggtgagctttctggaggccaaagcagaaacgcta
cacagaggggcccatcactacacagggcttttaaaactgcaagagcgggtgctcaatagt
gttgtcatctatctgcttggagatgaagaccccagggtgcggcatgttgctgccgcttcg
ttgatgaggctcgtcccaaagctgttttacaagtgcgaccaaggacaggctgaccccgtg
gtggccgtggcgagagaccagagcagcgtgtacctgacgcttctcatgcacgagacgcag
cctccgtcccacttctccgtcagcaccgtaaccagaatttatagaggctataacctgcta
ccaagcatcacagatgtcactctggaaaataacctctctagagtcattgcagccgtttct
catgaactgatcacatcgaccacgagagcgctcacatttggatgctgcgaagctctgtgt
ctactttcaactgccttcccagtttgcatttggagtttaggttggcactgcggagtgccc
ccgctgagcgcctcagacgagtccaggaagagctgcaccgtggggatggtcacgatgatc
ctgaccctgctgtcctcagcctggttcccgctggatctctctgcccaccaggatgctctg
attttagccgggaacttgctggcagccagtgcccccaggtctctgaggagctcgtggacc
tctgaggacgaggccagcgcggcagccaccaaacaggaggaggtgtggccagccctgggt
gaccggaccctggtgcccatggtggagcagctcttctcccacctgctgaaggtcatcaac
atctgcgcacacgtcctggacgaggtggctcccggacccgcagtgaaggcagccctgccg
tctctcacaaaccccccttctctgagcccaatccgacggaagggaaaagagaaggagccg
ggagagcaggcatctgtgcctgtgagccccaagaaaggcggtgaggccagtccagcctct
cgaccacctgaaacctcagggcctgttgccgcaaacaagtcctcgtcactggggagcttc
tgtcacctaccttcttacctcaaactgcacgacgtcctgaaagccactcatgccaactac
aaggtcaccttggatcttcagagcagtagtgagaagtttgggggttttctgcgctccgcc
ttggacgttctgtctcagattctggagctggcgacgctgcaggacatcgggaagtgtgtt
gaagagatcctgggatacctgaagtcttgcttcagtcgagagccgatgatggcgaccgtg
tgtgttcagcagttgctgaagactctgttcgggacaaacctggcctcccagtttgacagc
ctgtcttcccaccccagcaagtcgcagggccgagctcagcgcctcggctcctccagcgca
cggcccggcttgtaccactactgcttcatggcgccgtacacccacttcacccaggccttg
gcggacgccagcctgcggaacgtggtgcaggcagagcaggaccaggacacctcaggatgg
tttgacgtcctccagaaagtgtcgtcccagctgaagacaaacctcaccagcgtcacaaag
aaccgagcagacaagaatgctattcataatcacattcgcttattcgagcctcttgttata
aaagctttaaaacagtacacgaccacgacctccgtgcagttgcagaagcaggtgttggac
ttgctggcgcagctggttcagctccgggtcaactactgccttctggattcagaccaggtg
tttattggatttgtgctgaagcagtttgaatacattgaagtcggtcagttcagggagtca
gaggcgatcatcccaaacatctttttcttcctggtattactgtcttacgaacgttaccac
tcaaaacagatcatcggcatccctaaaatcatccagctctgtgatggcatcatggccagc
gggaggaaggcggtgacgcacgccatacccgccctgcagcccatcgtccatgacctcttc
gttttaagaggaaccaataaggctgatgcaggaaaagagcttgaaacccagaaagaggtg
gtggtgtccatgttactgagactcatccagtaccatcaggtgctggagatgttcacgctg
gtcctgcggcagtgccacaaggagagcgaggacaagtggaagcggctgtctcggcaggtg
gccgatgtcatcctccccatgctggccaagcagcagatgcacattgattctcacgaagcc
cttggagtgctgaacacgttgtttgagattttggccccctcctccctccgccccgtggac
atgcttttacggagtatgttcgtcaccccagacaccctggggtcggtgagcgctgtccag
ctgtgggtgtcgggcatcctggccatcttgcgggtgctgatttcccagtcgaccgaagac
attgttctgtcccgcatccaggagctctccttctccccacacttagtgtcctgtccgaca
atcagtaggttaagagacggggacagcacttcagcactggaggaacacagtgaagggaga
cagacgaagagcttgccagaagaaacgtttgccaggtttctgctccaactggttggcatc
cttctagaggacattgttacaaagcagctgagagtggagatgagtgaacagcagcacact
ttctattgccaagagctgggcacgctgctcatgtgtctgatccacatcttcaagtccggg
acgttccggaggatcaccgcagctgcctcgaggctcctgacggacggcgcggatggcggc
ttctacagcctggagagcctgaacgcgtgggtgcgctccatgatccccacgcacccggca
ctggtgctcctctggtgtcagatcctgctgctcgtcagccacaccgactaccgctggtgg
gcggaggtgcagcagacccccaaacgacgcagcttgtccagcacgaagtcgctgagtcca
gagatgtctggagaggacgaggatcccgacgtggcttccaagctggggatgtgcaataga
gaaatcgtgcgaagaggcgccctcattctcttctgtgactatgtctgccagaacctgcat
gactcggagcacttaacctggctcatcgtgaaccacgttcaagacctgatcagcctgtcc
cgcgagccgcccgtgcaggacttcatcagcgccgtccatcgcaatcccgccgccagtggc
cttttcatccaggcaattcagtctcgctgtgaaaatctttcaactcccaccatgctgaag
agaactctccagtgcctggaagggatccacctgagccagtcgggcgctgtgctgacgctg
tacgcagacaagcttttgtgcacgccgttccgtgtgctggctcgcatggtcgacaccctt
gcttgtcgccgggtggaaatgcttttggctgcgaatttacagagcagcacggcccagctg
ccggcagaggagctgatccggatccaggagcacctgcagagcagcgggttaggacagaga
caccagaggctctactccctgctggacaggcttcgtctcgccacggcaccagggtcgcgt
ggccccacgcccccagtcacgtcccatcccctggacggggacgggcccctggcactggag
gcagtgaatcctgacaaagactggtacgtgcggctggtgaagtcccagtgctggactcgg
tcagactctgccctgctggaaggcgcagagctggtgagccggatccccgcgggtgacctg
ggcgccttcatgatgcactcggagttcaacctgagcctgttggctccgtgcctgggcctg
ggcctgcgtgagatctcagggggccagcggagccccctttttgaagcagctcgcacagcg
actctggaccgcgtgagcgttgtggtccagcagcttcccgctgtccaccaagctttccag
ccgttcctgcctgtgcagcccaccgcctactggagcaagctggatgacctctttggggac
gctgcactgtatcggactctggccgccctggcccgggccctgggccagtacctgctggtg
ttctcccggctgcccagccacctgcacctccctcctgagaaggagagggacaccgtgaag
tttgtggtcatgactctcgaggcgctgtcgtggcacctgatccacgcgcgggtcccgctg
agcctggacctgcaggcgggcctggactgctgctgcctggccctgcagctgcccggcctc
tggagcctgctggccgcgcccgacatggtgacccacgcctgctccctcatccactgtgtg
cggttcatcctggaggccattgtggtgcaacctggggaccagcttcttagtccagaaaga
aggacgagcacccccaaggctgccagagaggacgacgtggattcagacacacagaaccct
cagtacatcgctgcagcctgtgggatggtggctgagatggtggagtgcctgccgtcggtg
ttggccttgggccacaagaggaacagccacacacccgccttcctcaccccggtgctcagg
aacatcatcgtcagcttggcccgcttgcccctcgtcaacagctacacgcgcgtcccgccc
ctggtgtggaagctcggatggtcgcctaaacccggaggggatttcggcacagtgttccct
gagatccccgtggagttcctccaggagaaggaggtcttcaaagagttcatctaccgcatc
aacacactggggtggaccagccgcacccagtttgaggagacgtgggctaccctcctcggc
gtcctggtgacccagccgctcgtgatggagcaggaggagagccccccggaggaggacacg
gagaggacccagatccacgtcctggctgtgcaggccatcacctccctggtgctaagtgcg
atgactgttcccgtggctggcaacccggctgtgagctgcctggagcagcagccccggaac
aagcccctgaaagcccttgacaccaggtttgggaggaagctgagcatcatcagagggatt
gtcgagcaagagatccaggcaatggtttccaggagagagaacgctgccactcaccacctg
taccaggcgtgggaccccgtcccgtctctggcaccggccaccacaggtgctctcatcagc
catgacaagctcctgctgcagctcaaccccgagcgtgagctgggggacatgagctacaag
cttggccaggtgtccatccactcagtgtggctggggaacagcatcacgcccctgcgagag
gaggagtgggacgaggaggaggaggaggaggccgaggccccagcaccgccgtccccaccc
acgtctccagtcaactccaggaaacaccgggctggagtcgacatccactcctgttcgcaa
tttttgcttgagttgtacagtcgctggatcctgccgtcgagctccgccaggaggaccccc
gtcatcctgatcagcgaggtggtgcgctcgctcctcgtagtctcggacttgttcacggag
cgcaaccagtttgagatgatgtacctgacgctgacggagctgcggaaggtgcacccccag
gaagacgagatccttctccagtacctggtgcccgccacctgcaaggcggccgctgtcctc
gggatggacaaggccgtggcggaaccggtgagccggctgctggagagcgcgctcaggagc
agccacctgcccagcacgctgggcgccctgcacggcgtgctgtacgtgctggagtgcgac
ctcctggacgacaccgccaagcagctcgtccccgtcgtcagcgactacctcctctccaac
ctccagggccgagcccactgcgtgaacgtccacagccagcagcacgtgctggtgatgtgc
gccacagccttctacctgatcgagaactacccgctggacgtggggcccgagttctcggcc
tccatcatacagctgtgtggggtgatgctgtccggaagtgaggaggccaccccgtccgtc
gtctaccactgcgtcctgaggggcctggagcgcctcctgctgtccgagcagctgtcccgc
ctggacgcggagtccctggtcaagctgagcgtggaccgggtgaacgtgcacagcccgcac
cgcgccatggcggccctgggtctcatgctcacctgcatgtacacagggaaggagaaagtc
agtccgggccgaacgtccgagcccagccccgcggcccccgacagcgagtccgtgatcgtg
gcgatggagcgcgtgtccgtcctctttgacaggatccggaaggggttcccctgtgaagcc
cgcgtggtggcgcgtgtcctcccccagttcctggatgacttcttcccaccccaggacgtc
atgaacaaggtcatcggcgagttcctgtccagccagcagccatacccgcagttcatggcc
actgtcgtgtaccaggtgttccagacgctgcacggcgcggggcagtcgtccatggtgcgc
gactgggtcatgctgtccctgtccaacttcacacagcggagcccggtggccatggccatg
tggagtctctcctgcttcttcgtcagtgcgtccaccagcccgtgggtctcggcgatcctc
ccgcacgtcgtgagccggatgggcaagctggagcaggtggacgtgagcctcttctgcctg
gtggccgcggacttctaccgacaccagatagaagaggagcttgaccgcagggccttccag
tccgtgttcgaggtggtcgccgcgcccggaaacccataccaccgcctgctggcgtgtctg
cggagcgtccacaaggctgccgcgtgctga
DBGET
integrated database retrieval system
