Cervus canadensis (wapiti): 122429825
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Entry
122429825 CDS
T07554
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122429825 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122429825 (SKIV2L)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122429825 (SKIV2L)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122429825 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
122429825 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
HAS-barrel
Motif
Other DBs
NCBI-GeneID:
122429825
NCBI-ProteinID:
XP_043306414
LinkDB
All DBs
Position
28:complement(19157683..19167774)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAER
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSSTTSLSLRRPPAPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPAAGLLSLSRLLEPLDLGGGDEDESEAVGEPGGPRQD
TVSASPGSIPLARASSLEDLVLKEASTAVAPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLGALEEPEVTGQLVDLPEYYSWGEELTETRSQIQHRIIESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSDSTSRVFTALVLCDKPVSEDPRERGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRLNGDKILEDFSKRQQPKFKKDPPSAA
VTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRT
VAKRIGEVQAACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtagagctgggatgcacggggcgctgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaggaagcagagcgg
ttgtttctgtcatctccagcctggctgcctctgcatggtgtagagcactcagcccggaaa
tggcagaggaagatggatccttggtctctcctggccacattgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggttctg
ctagaaaatacaaacttgtcatccacaacctccttgtctcttcgccggccaccagcaccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccactataacagatctgagcacccgagaggaggctgaggaggagatagactttgag
aaagacctccttactgttccacctggcttcaagaaaggcgtggactttgcaccaaaggat
cacccagctccagctgccgggttgctcagcctcagccgtctcctggagcccttggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggagagcctggcggtcccagacaggac
actgtttcagcctctcctggcagcattcctctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgtagcccccccagaacctcccaagcccccacctcag
gagcagtgggccattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccagccttccagtgggcgtttgagccagatgtgtttcagaaacaggccatcctg
cacttggagcggcacgactcagtctttgtcgcggctcacacatccgcggggaagacggtt
gtggctgaatatgccatcgcgcttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggatgtg
gggctgctcaccggggacgtgcagctgcacccagaagcctcttgcctcattatgacaaca
gagatccttcgctccatgctgtacagtggctcggacgtcatccgggacctggagtgggtt
atctttgatgaggttcactatatcaatgatgctgagcgcggggttgtgtgggaggaggta
ctcatcatgctgcctgaccacgtgtccattatcctcctgagtgctactgtccccaacgcc
cttgagtttgctgactggatcgggcggctgaagcgtcgccagatctatgtgatcagcacc
gtcgctcgcccagtgcccctggagcactatctcttcacggggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgtggcgccttccacacaaaggggtactatgcg
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcccaggaccgtggtgtgtacctgtccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggcctcgggcctcacctccctggacctgacgacgagttcggagaagagtgagatt
cacctcttcctgcagcgctgcctcgcccgtctccgcggctctgaccgccagctgccccag
gttctgcacatgtcggagctcctgcaccgtggcctgggtgtgcaccacagtggcatcctg
cccatcctcaaggagattgtggagatgctcttcagccgcggcctggtcaaggtcttgttt
gccacagagaccttcgccatgggtgtaaacatgccggcccggacggtggtatttgactcc
atgcgcaagcacgatggctccaccttccgggacctacttcctggggagtatgtgcagatg
gcgggccgggccggccggaggggcctggatcccacgggcacagtcatcctgctctgcaag
ggccgtgtgcccgagatggcagacctgcaccgcatgatgatggggaagccgtcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgctctc
agggtggaggacatgatgaagaggagcttctcagagtttccatcccgcaaggacagcaag
gcccacgaacaggctctggctgaactgaccaagaagttgggggctttggaagagcccgag
gtgactggccagcttgtcgacctgcctgagtattacagctggggggaggaactgactgag
acccggagccagatccagcaccgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtggttgtgaagaatcaggagcatcacaacgcactgggtgtgatcctt
caggtttcttcagactccaccagcagggtgttcacagccctggtcttgtgtgataagccc
gtgtctgaggacccgcgggagagggggccagcctccccagacgtgccctacccagacgac
ctcgtgggattcaagctgttcctgcctgaagggccctgtgaccacactgtggccaagctc
cagccaggagacgtggccgccatcaccaccaaggtgctccggctgaacggggacaagatc
ttggaggacttcagcaagcggcagcaaccaaaattcaagaaggatccgccctctgcggcc
gtgaccactgctgtccaggaactgctacgactagctcaggcgcaccccacaggacccccc
accctcgaccctgtcaatgacctgcagctcaaggatgtgtctgtggtcgaaggggggctc
cgggcccggaagctggaggagctgatccggggggctcagtgcgtgcacagtccccgtttc
cctgcccagtacctgaagctgcgggagcggatgcagatccagaaggagatggagcggctg
cgcttcctgctgtcagaccagtcgctgctgctgctccccgagtaccaccagcgagtagag
gtgctccgaaccctggggtacgtggacgaggcgggcaccgtgaagctggccgggcgggtg
gcttgcgccatgagcagccacgagctgctcctcaccgagctgatgtttgacaacgcactg
agcgccctgcggcctgaggagatcgctgccctgctctccggcctggtctgccagagcccc
ggggaccctggtgatcagctccccagcaccctcaaacagggggtggaacgggtccggact
gtggccaagaggattggtgaggtccaggcggcctgtggcttgaaccagaccgtggaggaa
tttgtcggggagctgaatttcgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccctgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcacttcggggggcggcccgcctggtgggcgaacct
gtgctaggtgccaagatggagacagcagccaccctgttacggagggacattgtctttgct
gccagcctttacacccagtga
DBGET
integrated database retrieval system
