Cervus canadensis (wapiti): 122430857
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Entry
122430857 CDS
T07554
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccad03009
]
122430857 (IGHMBP2)
03012 Translation factors [BR:
ccad03012
]
122430857 (IGHMBP2)
Enzymes [BR:
ccad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122430857 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
122430857 (IGHMBP2)
Ribosome biogenesis [BR:
ccad03009
]
Eukaryotic type
Other ribosome biogenesis factors
122430857 (IGHMBP2)
Translation factors [BR:
ccad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122430857 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
DEAD
nSTAND3
AAA_22
AAA_16
UvrD-helicase
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND_NTPase5
PhoH
Zot
Flavi_DEAD
AAA
AAA_25
DnaB_C
IstB_IS21
AAA_18
NPHP3_N
UvrD_C_2
DUF7205
ATPase
ABC_tran
AAA_5
AAA_31
NTPase_1
Motif
Other DBs
NCBI-GeneID:
122430857
NCBI-ProteinID:
XP_043307701
LinkDB
All DBs
Position
29:43615128..43639870
Genome browser
AA seq
974 aa
AA seq
DB search
MASTPVESFVTKQLELLELERDAEVEERRSWQENVSLKELQSRGVCLLKLQVSSQRTGLY
GRLLVTLEPRRCVSAAALPSSSFTSGDIVGLYDEGGQLATGILTRITQKAVTVAFDESHD
SQLSLDQEHSYRLLKLANDVTYKRLKKALISLKKYHSGPASSLIEVLFGTSDPSPPSEMP
PLTFCNPALDASQQEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAP
SNIAVDNLVERLAQRKQRILRLGHPARLLDSIQQHSLDAVLARSDGARIVADIRRDIDQA
WVKNRKTQDKREKSNFRDEIKLLRKELKDREEAAMLESLAAASVVLATNTGASADGPLKL
LPDGHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIVSHKAALAGLSLSLM
ERLAEQHGAGAVRMLTVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEE
TGLPLLLVDTAGCGLLELEEEDEQSKGNPGEVRLVSLHVQALVDAGVRAADIAVITPYNL
QVDLLRQSLAHRHPELEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVSNHAFLKTLVDYLTEHGEVRTAFEYLDDIVPENYSHEGTQAGGKPR
GSAATGRRTPGGTGPGRKKPSGTPLGSSEAQPQPILDGGGWDGAGSTDGADGFRVAIAEF
VASEKTQLEFPASLNSHDRLRVHQIAEEFGLRHDSTGKGRERFVTVSKRVPPAPAAPAPA
AGPGGRAPLCPETPSSEQPEPPIGEPSSQDQPDLKALHLERLQRAGAREGPRAPGPAPRK
LPEKKKKKDARGPAARELPTEEDFDALVSAAIKADNTCSFAKCTVSIVTLGQLCPHCGRR
YCLGHHLPEVHGCGERARAHARQRISREGVLYPGSGTKDRSLDPAKRAQLQRKLDKKLDE
LTGQRRSKRKEKGK
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgacacctgtggagagcttcgtgaccaagcagttggaactgctggagctcgag
agagacgcggaggtcgaggagcgcagatcctggcaagaaaatgtctctctgaaggaactc
cagagccgaggcgtctgtttgctgaagctgcaggtatccagccagcggaccgggctgtac
ggaaggctgctcgtcaccttagagcccaggagatgcgtgtctgccgctgcacttcccagt
agcagctttacttccggagacatcgtgggtctgtatgatgaaggtggtcagctggccact
gggatcctgacccgcatcacccagaaagcggtcaccgtggcctttgacgagtcccacgat
tcccagctgagtttggaccaagagcattcctatagactgttgaagcttgccaacgacgtg
acttacaagcgactgaaaaaagctctgatttccctaaagaagtatcactctggccccgcg
tcctcgctcatagaggtcctcttcggcacatcagaccccagtcctcccagtgagatgccc
ccgctgaccttctgcaaccctgccttggatgcctcccagcaggaagcggtcctgttcgcg
ctgtcccagaaggaactcgccatcatccatgggcccccgggaactgggaagaccaccacc
gtggtggagatcatccttcaagctgtgaaacggggctcaaaggtcctgtgctgcgcgccc
tctaacatcgccgtggacaatctcgtggagcggctggcccagcggaagcagcggatcctc
cgcctcggccacccggcgcgcctcctggactccatccagcagcactcgctggacgcggtc
ttagcgcggagcgacggcgcccggatcgtggccgacatcaggagggacatcgaccaggcc
tgggtgaaaaacagaaagacccaggataagagagagaagagtaattttcgagatgaaatc
aagctgctgaggaaggagctgaaggacagggaggaggcagccatgctggagagcctggcg
gcggccagtgtggtcctcgcgacaaacacaggcgcctctgcggatggcccgctgaagctg
ctgcccgatgggcactttgatgtggtggtcattgacgagtgtgcccaggccctggaagcc
agctgctggatacccctgctgaaggcccggaagtgcatcctggccggagaccacaagcag
ctgcctcccaccatcgtctcccacaaggcagcgctggccgggctgtcgctcagcctgatg
gagcgcctggcggagcagcacggggccggggcggtgcggatgctgacagtgcagtaccgc
atgcaccaggccatcgcgcgctgggcctcggaggccctgtaccacggtcagctcaccgcc
cacccttccgtggccgggcacctcctgagggacctcccgggcgtggcggccactgaggag
acgggcctgcccctgctgctggtggacacggccggctgcgggctgctggagctggaggag
gaggacgagcagtccaaagggaaccccggtgaagtgcgccttgtcagcctgcacgtccag
gcgctggtggacgcgggtgtccgggccgccgacatcgccgtcatcacgccgtacaacctg
caggtggacctgctcagacagagcctcgcgcacaggcacccggagcttgagataaggtcc
gtcgacggcttccagggccgggagaaggaggctgtgatcctgtccttcgtcagatccaac
aggaaaggtgaggtgggcttcctcgccgaggaccggcgcatcaacgtggcggttacccgt
gcgcgtcgccacgtggccgtggtctgcgactcccgcacagtcagcaaccacgccttcctg
aagaccctggtggactacctcacggagcacggggaggtgcgcacagcctttgagtatctc
gacgacatcgtccctgagaactactcccacgagggcacccaggcaggcgggaagccccgg
ggctctgcggcgactggcaggaggacccctggggggaccgggccgggccggaagaagccc
agcggaacgcccttgggctcctccgaggcgcagcctcagcccattctcgacggaggcggc
tgggacggcgccgggagcacagatggtgcagacggcttcagggtcgcgatcgcggaattc
gtggcgagcgagaagacgcagctggagttccctgcctccctgaactcgcacgacaggctg
cgggtccaccagatcgcggaggagttcgggctgaggcacgacagcaccgggaaggggagg
gagcgcttcgtcacggtgagcaagagggtcccgcccgcccccgcagctccggcacctgct
gcggggcccggcggcagagcccctctgtgtcccgagacccccagctccgagcagccggag
ccccccatcggggagccgagtagccaggaccagccggacctgaaggcgctgcacctggag
agactgcagagggcgggggccagggaggggccccgcgccccgggcccggcgccccggaag
ttaccggaaaagaagaagaagaaagacgcgagaggccctgcggccagggagctgcccacc
gaggaggactttgatgccctggtctcggcggccatcaaggcagacaacacctgcagcttc
gccaagtgcacggtcagcatcgtgaccctgggccagctctgcccgcactgtggccgccgc
tactgcctcggccaccacctgcccgaggtccacggttgtggggagagggctcgcgcccat
gctcggcagaggatcagccgggaaggggtcctctaccccggcagtgggaccaaggacagg
tccctggaccctgccaagcgggcccagctgcagaggaagctggacaagaagctggacgag
ctgactggccagaggcggagcaagaggaaggagaagggaaagtga
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