Cervus canadensis (wapiti): 122432054
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Entry
122432054 CDS
T07554
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
ccad
Cervus canadensis (wapiti)
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccad03036
]
122432054 (SHOC1)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122432054 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
122432054
NCBI-ProteinID:
XP_043309711
LinkDB
All DBs
Position
30:complement(33170012..33280893)
Genome browser
AA seq
1509 aa
AA seq
DB search
MFPAFKYCAIDYLNESVVRKKLCKDALLLRIPSCLYRDDNYPASVTDNKFRRPWTRVSAV
SILGKTDISVLDQWKASLTVDEFLEKKTVTGMVTQLNCEFDEIVPSSNPNSQTEAEEASL
YTHKEYKEFFTLVTCLEKCPSLQAQKQDLSIDEEIIFVSYLMAYKSHLPTLHTLLSRLKL
FLVKDPLPDFKAQISTEAKFFRECFSFQGDVKCFVKEDFYMDKEDFCQEKLKDTVGLNEA
SSTLLECELLVTISHKQEVDIPSLSELKESLNLMPEIINYADENENLSKTDLTIKHGVDL
EDIKCSSIEILTIQNQCEPEYRQPGELEMPLTHLDLTNHHSSVNSLCAELQTFPSSPICK
INLLTAEESANKYHMLWQLESCRSSLNSFLIRVPRTEEPNNQYSPTDLKKIFSVEEEKLV
VNPINAEWWKEARLNLTETLEPLSTCLCHNNLSSDDAKLEAFLPTSVPQLEPWLEHEDCS
SPLTLINEQSTNDHLSPPQKTPSPTKEVSDLHLSDECVSVERPRKEEKPKNDLELGYGII
QNKENKDHLELDSPVPSTESSSSSRIEKASFKHGKKWENNLDLLSDFIMLRNKYPTCTSK
TEVTDNDGKDELQNEELSLTLQEESPIVCNNKTLEKTSQERRADSVIEIPASDSQCQAYC
LLEAAASPILEKLVCLCTLPATNWKFATVIFDQTRFLLKEQEKIISDAIHEGKNDEREMT
FKYAALLHLLVTIRDVLLTCNLDTALGYLSNAKDIYKSVFGSCLYDIWRQLEIVQFIRGK
KPETNYKIRELQCQILNWMQSEQQIKVLIIIRMDSDGEKRLLIKILNKIEGLTLTVLHSN
KRKDFLESEGVLNSTSVCVVVPNQYIGADFPWSNFSFVVEYNFVENSCWTEHCEKLNIPY
MAFKVILPETILKRSTLLDSFGGFLLEIQIPYMFFASEGLLNTPEILQLLESNYNITLVE
RCCSESLKLFGGTEHYVVMTIDEHTAVILQDLEELNCEKASDNIIMRLMALSFQYSYCWI
ILYAKKPLNSEYHLTEKTLHHLALIYAALVSSGLKSEELDVKLIIAPGVEETALMIRQIA
DHNLMTSKRDPHEWLDKSWLKVAPSKEEMYLLDFPSITPLVAQLMLYKGPSLNWILLATL
CQLQELLPEVPEKVLKHFCGITSLFKISPSITKSPQISSPRENRDQTRTFTSQSSASASS
DSVIQEHNNYQYSNLGERVQEDTNSASNYNSSLMELKEMPGILPSVSSYNQTSHWKESSC
NPNMVQNNSFLTNIEARNLSGNSFLNQNDSESDVFSLGLTEMNYETIISPIDTQEKVTPH
FINYQKKGTHEKKGPIKKELSAPVFSLEGSQPPLHWNFKRNVWEQQNHSFNLQCGAEQST
CDKWYSQKDNLFINQQKYQSDDLEGFICESPNAGTKKTFWKELPSVPSLDLSCASDSNVN
QKEFNSLYFYQRAGKCLGQKTRSESSSNSGDNNSLTDFMCLQLPQFKKQRLVYEKVPGRL
DGQTRLRFF
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcattcaaatattgtgcaatagattatttgaatgagagtgtggttagaaag
aagttgtgcaaagatgctttattgcttcggatcccttcatgtttatatcgagatgacaat
tatcctgcaagtgttactgataataagtttaggagaccatggacaagagtttcagctgtt
tcaattttgggaaagacagatatctcagtcttggatcaatggaaagcaagtctcactgtg
gacgagttccttgagaaaaaaacagttacaggaatggtgacccagcttaactgtgaattt
gatgaaattgttccgagttcaaacccaaactcccaaactgaagcagaggaagccagcttg
tatacccataaggaatataaggaattctttacacttgtcacctgcttagaaaaatgtcca
tcacttcaagcacagaaacaagatttgtctattgatgaagaaataatttttgtaagttat
ttgatggcctataaaagtcacctaccaactttgcacactctgttgagtaggctaaaacta
tttttagtaaaggatcccttgccagatttcaaagcacagatctccacagaagctaaattt
ttcagggagtgtttctcttttcaaggagatgtaaaatgttttgtgaaagaagatttttac
atggataaagaggacttttgtcaggagaaactgaaagatacagtaggtttaaatgaagct
tcatcaactttgcttgaatgtgaattgttagtaactataagccacaaacaagaagttgat
attccatcactctcagaactgaaggagtcattaaacttaatgccagaaataataaattat
gcagatgaaaatgaaaacctttccaaaacagatcttactatcaagcatggagttgacctt
gaggatataaaatgcagctccatagaaattttgaccattcaaaatcaatgtgaaccagag
tacaggcaaccaggagagttagaaatgccattaactcatctagacctaacaaaccaccat
tcttcagtgaattcattatgtgcagaacttcagacatttccatcttctcctatttgtaaa
attaatttgcttactgctgaagaatcagctaacaaataccatatgctatggcagttagaa
agctgccgaagctctctgaactcatttttgattagagtgccaagaactgaagagcccaac
aaccaatattcacctacagatttgaaaaagatattttctgttgaagaagaaaaacttgtg
gttaatcctataaatgcagagtggtggaaagaagcaagactaaatctgacagaaactttg
gaacctctaagtacatgtttgtgtcataataatttatcttccgatgatgctaaactggag
gcatttttacctacaagtgtgcctcagttagaaccatggttagaacatgaagattgttcc
tctcctcttacacttattaatgagcaatctacaaatgatcatttatcacctccacaaaag
actccatctccaactaaagaagtatcagacttgcatctttctgatgaatgtgtctctgtt
gaaagaccaagaaaagaagaaaaaccaaagaatgacctagaactaggttatggaataatc
caaaataaagaaaataaagatcacttggaacttgacagcccagtaccatctactgaatca
tcttcctcttcaagaattgaaaaagcatcttttaaacatggtaaaaaatgggagaataat
ttggaccttttgagcgactttattatgctgcgaaataagtatccaacttgtacctcaaag
actgaagtcacagacaatgatggaaaagatgaacttcaaaacgaagaactttctttgact
cttcaagaagaaagccctattgtttgtaataataaaaccctagagaaaacaagtcaggaa
agaagagcagatagtgtcatcgaaattccagcatcagatagccagtgccaagcatattgt
ctcctggaagcagcagcttctcctatcttagaaaaacttgtatgcctctgtactcttcct
gctactaactggaaatttgctactgtcatttttgaccaaacaaggttcctcttgaaagaa
caagaaaaaataataagtgatgctattcatgaaggtaaaaatgatgaaagagaaatgaca
ttcaagtatgctgctctcttacaccttttggtaacaattagagatgtccttttaacctgt
aacttggacacagcattgggatatttgtcaaatgcaaaagatatctacaaaagtgttttt
ggttcctgtttgtatgacatttggcgacaactggagatagtacagtttataagggggaaa
aagcctgaaaccaactataagatacgagaactgcaatgtcagatactaaattggatgcaa
agtgaacagcaaattaaggtgctgattataataagaatggattcagatggcgaaaagcgt
ttactcattaaaatccttaacaaaatagaaggtttgacactgactgtcttacattcaaac
aaaagaaaagactttctggaatccgaaggtgttttaaacagtacaagtgtctgtgtagtt
gtacccaatcaatacattggagcagatttcccatggagtaatttctcatttgtggtggaa
tacaattttgtagaaaactcttgttggactgaacattgtgaaaaactgaatattccttac
atggcctttaaagtgattcttccagaaacaattttaaagagaagcaccttgctggatagt
tttggtggttttctcttggaaattcagattccatatatgttttttgcatctgaaggactt
cttaatactccagaaatactacagttattagaatccaactataacatcacactagtggag
agatgctgcagcgagtcactgaaactctttggaggtacagagcattatgtggtgatgaca
attgatgagcacactgctgtaattttgcaggacctagaagaactaaactgtgagaaggca
tcagacaatatcattatgagactgatggcattatcattccagtacagctattgttggata
attttatatgccaaaaagccattaaactcagagtaccatcttacagaaaagactcttcat
cacctagcactgatttatgcagctttggtttcatctgggctaaaatcagaagaactggat
gtaaagcttataattgccccaggagtggaagagactgcactgatgattcgacaaattgct
gaccacaatttaatgacctcgaagagagatcctcatgaatggttggataagtcctggctt
aaagttgcaccatctaaggaagaaatgtacttacttgattttccaagtattactccattg
gtggctcagctcatgttatataaaggaccttcactgaactggatattgttagcaactctt
tgtcaacttcaggaactcctacctgaagttccagaaaaagtgttaaagcatttttgtggc
atcacttccttattcaagattagtccttccataacaaaatcacctcaaatttcatcacct
cgggaaaacagggatcagactagaacctttacttctcagagttcagcttctgcatcttca
gattctgtcattcaagaacataataattatcaatattcaaatttaggagagagagtacag
gaagacaccaacagtgcttcaaattataactcttcccttatggaattaaaagaaatgcca
ggcattttaccatctgtgagttcttacaatcagaccagccattggaaagagtctagttgt
aaccctaacatggtacagaataattcttttctgactaatatagaagcaaggaatctgtct
ggtaattcttttctgaaccagaatgattcagagtcagatgtcttttctttgggtctaaca
gaaatgaattatgaaactataatatcaccaattgacactcaggagaaagtcacccctcac
tttataaattatcagaaaaagggaacacatgaaaaaaaaggacctataaaaaaagaattg
tcagctcctgtcttttcacttgagggttctcaacctcctcttcattggaactttaagaga
aatgtatgggaacaacagaatcattcattcaacttacagtgtggagcagagcaaagtaca
tgtgacaaatggtactctcagaaagataatttattcattaatcagcaaaaatatcagtca
gatgacttagaaggcttcatctgtgaaagtccaaatgctgggactaaaaagactttctgg
aaagaattaccatctgtccccagtttggatttatcctgtgcttctgattctaatgtaaat
caaaaagaattcaacagtctttatttctaccaaagagctggaaaatgtttaggacagaaa
acgcgctctgagtcttcatctaactcaggagacaacaactcattaacagatttcatgtgc
ttacaactaccgcaattcaaaaaacaacgtcttgtgtatgaaaaagtccctggtagactt
gacggacaaactcgtctgaggtttttttga
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integrated database retrieval system
