Cervus canadensis (wapiti): 122432735
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Entry
122432735 CDS
T07554
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122432735 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccad04121
]
122432735 (SLX4)
03400 DNA repair and recombination proteins [BR:
ccad03400
]
122432735 (SLX4)
Ubiquitin system [BR:
ccad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
122432735 (SLX4)
DNA repair and recombination proteins [BR:
ccad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122432735 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
AAA_28
YlbE
FokI_D3
Motif
Other DBs
NCBI-GeneID:
122432735
NCBI-ProteinID:
XP_043310718
LinkDB
All DBs
Position
32:36864604..36883923
Genome browser
AA seq
1764 aa
AA seq
DB search
MMDESDDDFQELCASFFQRVKKNGPKEVSKEKKTQKASNGTQIRSKPKRTKPTASKSKTL
QGPTERKTRPGRQVPRTQKHGAPKRPETEPAPPENTEGGVHTSAVLQDSVRSTQTEASMD
SLSQPPPSCLIAMVPSPSKPRAAELVLQRMQQFKRADPERLKRASEGCSLEAAPEENVPK
GPQDVMAVNGHILRECQGSAPATSGCGPKLPTTESDTAVALALQQELGQEQVSAPDNSLE
EKGLFFCQICQKNLSAMNVTRRQQHMNRCLDEAEKALRFPMPPIPECPICGKPFLTLKSR
ISHLKQCAVKMEVGPQLLLQAVRLQTAQPVGASGAPAPSLSDGAGCLKRKGATTKKEPRK
RRKVTGPEAPSEDLLVAMALSRSETEREAVPAALSLGNAFAEKTRLGAEKKTRKKKAPAS
PPQLLVQDPETTGRQIEDRVAQLLSEEVELSSTPPLPASRIREEELAKGSWALRPPGGAQ
NLLWEASALTGAGALESFYTASLVPPLVPQRPTKGLTQEPMRLPRPPKPPGLSVGTPPSA
HGAHSVGHSLRSPVPSASQRERQALQDLLELAGEGLPASPCSRDLAGSGGAAGMDLSLGG
LPLTGFVLPAKEKYLEEGGRASLALGLLVADFSAMVNNPHLSDIQFQTDSGEVLYAHKFV
LYARCPLLMQHVNSEGFLAEEDGDLRHQRVLLSDVSAEAAQAFLHYLYAADSVLTPQLAP
DLRSLAQRFGVSELVHLCEQVPIVTDAEGGQQKEQEDEDADGRVETFQELLRSMWLGEEE
GAEALLKPEGREEDREKVNEEEMEEIYEFAATQRKRLQGEKPEPKEEGDLLREDGPVSGE
ILTSKQDKEQPENARQLESSGQGRDETPAKWGNTRPSTLLPPSDQALNGEEKAEASKGVP
APPHSSSPAQGRAERQENAPLCSVDDDNDQQPFSSPQAGYPELSRVMSNQEEGNRTIQES
EVEGFHPSAHQQAHPSRSCFFPPQPHQGRSPRQPRPQPLSPSDLPLQGTASSVASQNSSP
KPKRARRLPSSREDPGQKDKECSSPLERRGKGVLIFPEKSPPMDLTWSGPGRQSSRPETS
PCSVNREDEVILLLDSDEELELEQTKAKSFLNSPTEDKKVLEVSTKSSELFSIIDLDAEQ
EPPQSQTGSQAPLPQEVEGRLGASAEEDSTTTDTSWLVPATPLAGRSCDCSSQTQITGLR
ARPPADPLSPPTPRALLENRDEPEATSKFSVIVPQTSSPRLGPTTPGSSDGRRQVCRSTS
SPRRRCLPYASPLAPRPILGGLANLPGQLPRCPPPPQSPAAQAPVSEVVEVEDSEDEQEA
ASQQASSSPLLDGDPPIPAEDWCWHVEPLSPIPIDHLNLERTGPLSTSSPSSRAEGAPDS
RDCRSPALLGTTPVRGSHAGRRKSREKSSGAGSPGSHRQSFLNSALWDDWNEEDQRSSEA
LPLPQTPRADGAQSSHELQTPEGADRKNLPPKVPITPMPRYSIMETPVLKKELDRFGVRP
LPKRQMVLKLKEIFQYTHQTLESDSEDEGQSSQLPLAAPCSQTYTTQTSKASRAAGHTQL
EAPPGRIPQRSKGPAKTKGPQHRKQQPGGSISALNVSPAKEEPLDPGGDAQFPASQESTA
TSVDSGDSSCSSQSSSCEFGAALESAGEEEAGEEAVSASQAAVQAVATEEAVRRYIRSQP
ALYRKVLLYQPLELAELQAELKQQGIRVASGKLLDFLDTQCITFTTAATRKEKLGRKRRQ
PTGKKRGKAGRPAPRSPVSAASSL
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagatgatgactttcaggaactctgtgccagctttttccaaagggtg
aaaaagaatggccccaaggaagtgtcaaaggaaaagaagacacaaaaggcctccaacggc
acccagataagaagcaaaccaaaaaggaccaaaccaactgcttctaagagcaaaaccctg
caaggccccactgagaggaaaactcgccctggccgccaggtcccacggactcaaaagcat
ggggcacccaagaggccagagactgaaccagctccccctgaaaacaccgagggaggtgta
cacacttctgctgtactccaggatagcgtgcggagcacccagacagaggcctccatggac
agcctctcacagccccctccttcctgtctgattgcgatggtgccaagtccctccaaaccc
agggcggcagagctggtgctccagcgaatgcagcagttcaagagagcagaccccgagcgt
ttaaagcgagcttccgaaggctgctcgctcgaggctgcacctgaagagaatgtcccaaag
ggccctcaggatgtgatggcggtgaacgggcatatcctgcgtgagtgccaagggtctgct
ccggcaacatcagggtgtgggcccaagctccccaccacagaaagcgacaccgcagtggcc
ttggccctccagcaggagcttgggcaggaacaggtgtccgcacccgacaacagcctggag
gagaaggggttgttcttttgccagatctgtcagaagaacctctcagccatgaacgtgaca
cggaggcagcagcacatgaaccggtgcctggatgaggctgaaaaggcactgagatttccc
atgcctccgatccctgaatgccccatctgcggcaagccatttctcaccctgaagagcaga
atcagtcacctgaaacagtgtgcggtgaagatggaggtcggtccgcagctcctgctccag
gctgtgcggctgcagacggctcagcctgtgggcgcctcgggcgctccggcacccagcctc
agcgatggagctggctgtctgaagcggaagggagccaccaccaagaaggagccacggaag
aggcggaaggtcactgggcctgaggcaccatccgaggacctgctggtggccatggctctg
tcccgctcggagacagagcgggaggcggtgccggcggcgctcagcctggggaacgctttt
gcagagaagacgagactaggagcagagaagaaaacccgcaagaagaaagcccccgcgtcc
cccccacagctgttagtccaggacccggagaccacgggccggcagatagaggaccgcgtg
gcccagctcctgtcggaggaggtggagctgtccagcacgccgccgctccctgccagcagg
atccgagaggaagagctggccaagggcagctgggccctgcgaccgcctggaggggcgcag
aacttgctgtgggaggccagtgccctgaccggggctggggccctggagtccttttacacg
gccagcctggtgcctcccctggtgccccagcggcccaccaagggtctcactcaggagccc
atgcggctgccacgaccacccaagccgccaggactgagtgtgggaacacccccttctgcc
cacggcgcccactctgtgggccacagcctccggagcccagtgccctccgccagccagagg
gagcgccaggccctgcaggatctgctggagctggcgggagaggggttgcccgccagcccg
tgcagcagggacctggctggctcgggaggggctgcagggatggacttgtcactcggcggc
cttccactgactgggtttgtcctgccagccaaggagaagtacctggaggagggcggccgg
gcttcgcttgcccttggtttgctggtggccgacttcagtgccatggtcaacaacccacac
ctgagcgacattcagtttcagacagacagtggggaggtgctttatgcccacaagtttgtg
ctctatgcccgatgcccacttctcatgcagcatgtaaacagtgaaggcttcctggctgaa
gaggatggtgacttgaggcaccagcgcgtgctgctgagtgacgtcagcgccgaggccgcc
caggcgttcctgcattacctctatgctgccgacagcgtcctgactccccagctggccccc
gacctgcgctctctggcccagaggtttggggtgagtgagcttgttcacctgtgcgaacaa
gtgcccattgtgacggatgcagaaggtggacagcaaaaggagcaggaagatgaggacgct
gacggcagagtggagactttccaagagctcctgcgttctatgtggctgggtgaggaggag
ggagcagaggccctcctgaaacctgagggccgtgaagaagacagagaaaaggtcaatgag
gaggagatggaagaaatttatgaattcgcagctactcagcgaaagcggctccagggggag
aaaccagagccaaaggaagaaggcgacctgctcagggaggatggtccagtttctggggaa
atcctcacaagcaaacaggataaagaacagccagaaaatgcaaggcagttggaatcatct
gggcaaggaagagatgagaccccggccaaatggggaaacacaagaccatccacactcctg
ccccccagcgaccaggctttgaatggggaagagaaagcagaggcctctaagggagtaccg
gcccctccccactcctccagccccgcccagggccgggcagagaggcaggagaacgcccct
ctgtgctcagttgatgatgataatgatcaacagcctttttcatcacctcaagctggatac
cctgaactctcccgggtgatgagcaatcaggaggaaggaaataggaccatccaggaaagc
gaggtagagggtttccatccctctgcccaccagcaggcacacccctcacgctcatgcttc
ttcccaccacagccccatcaaggccggagtcctcgccagccacgtcctcaaccccttagc
cccagtgacctcccgctgcagggcacagcttccagcgtggcctcccagaactcatcaccg
aagccaaagagggccaggcgccttccctcatcacgtgaggacccaggccagaaagacaag
gaatgtagttccccattagaacgcagaggtaaaggtgtcctgatcttcccagaaaaatct
ccacccatggatctaacctggtcaggacctggccgccagagctccaggcctgagacttct
ccctgcagcgtgaacagagaagatgaggtgatcctgttactggattcagatgaagagctg
gagctggagcaaaccaaagcaaaatcatttctgaacagtcccacagaagacaagaaagtt
ctggaagtcagcaccaagtcctctgaattgttctccatcatcgacctcgacgcagagcag
gagcctccccaaagccagacaggaagccaggccccgctgccgcaggaggtggaggggcgc
ctgggggccagcgccgaggaggacagcaccaccacggacacctcgtggctggtgcccgcc
actccgctggctggcaggagctgcgactgttcctcgcagacccagatcacaggcctcagg
gccaggccaccagcagacccactgtctccgcccacgcccagagccctgttagagaacagg
gacgaacccgaagccacgagtaagttttcggtcattgtaccccagacgtcgtccccacgc
ttgggccccaccactcctggaagctctgacgggagaaggcaggtctgcaggagcacatcc
agcccccgccgcagatgcctcccatacgcttctcctctggctccccgacccatcttagga
ggcctcgccaacctccccgggcagctcccaaggtgcccgcctcctccgcagagcccggcg
gctcaggctcccgtgagtgaagtggtggaggtggaagacagtgaagacgagcaggaggca
gcctcccagcaggcgagcagcagccccctgctggacggtgaccccccgattccagccgag
gactggtgctggcacgtggaacccctctcaccaatccccattgaccacctgaacctcgag
cggacgggccccttaagcaccagcagccccagcagcagggcagagggggccccagacagc
agggactgccgctccccggcactgctgggcaccacccccgtccgagggagccacgctggc
cggaggaagtctcgagagaagtcctctggggccggctcccctgggagccaccggcagagc
tttctgaactcagctctgtgggatgactggaacgaagaagatcagaggtcctcagaggct
cttcctctgccccagacgccgcgcgcagatggagcccagagttcacacgagttacagacg
ccagaaggtgctgatcggaagaacttgcccccgaaagtgcccataaccccaatgccaagg
tactccatcatggagactccggtgctgaagaaagagctggacaggtttggggtccgccct
ctgcccaaacgccagatggtcctgaaactgaaggagatattccagtacactcaccagacg
ctggagtcagactccgaggacgagggccagtcctcacagctgcccttggcggctccctgc
agccagacttacaccacccagacctctaaggcttcaagagcagctggccacacccagctg
gaggcccctcctggccgcattccccagaggtccaagggacctgccaagaccaagggcccc
caacatcgcaagcagcagcctggtggcagcatctctgccctgaacgtgtcaccagccaag
gaggagcctttggaccctggcggggacgcccagtttccagcctcccaggagtccacggcc
acctctgtggacagcggggacagctcctgcagctcacagagctcttcctgtgagtttgga
gcggccttggagtctgcgggagaagaggaggcgggcgaggaggcggtcagcgcctcccag
gcggccgtccaggcagtggccacagaggaggccgtgcggcgctatatccgctcccagcca
gccctctaccgcaaggtcctgctgtaccagcccctcgagctggcggagctgcaggccgag
ctgaagcagcagggcatccgtgtggcctcggggaagctgctggacttcctggacacccag
tgcatcaccttcaccacggccgccacccgcaaggagaagcttgggaggaagagacggcag
cccacaggcaagaagaggggcaaagccggcaggcccgcccctcgctccccagtctcggcc
gccagcagcctgtga
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integrated database retrieval system
